correct detecting cellranger versions and barcode directory #320
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Test DropSeq / Nadia | ||
on: workflow_dispach | ||
jobs: | ||
test: | ||
runs-on: ubuntu-20.04 | ||
steps: | ||
- uses: actions/checkout@v2 | ||
- name: Build the stack | ||
run: docker-compose up -d | ||
- name: Status | ||
run: echo "build complete" | ||
test-dropseq: | ||
runs-on: ubuntu-20.04 | ||
steps: | ||
- uses: actions/checkout@v2 | ||
- uses: docker/setup-buildx-action@v1 | ||
- uses: docker/login-action@v1 | ||
with: | ||
username: ${{ secrets.DOCKER_HUB_USERNAME }} | ||
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | ||
registry: ${{ env.REGISTRY }} | ||
- name: Build and push | ||
uses: docker/build-push-action@v2 | ||
with: | ||
context: ./ | ||
file: ./Dockerfile | ||
tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test | ||
push: false | ||
- name: clear environment | ||
run: rm -rf * | ||
- name: Test DropSeq | ||
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m bash /universc/test/run_tests_dropseq_gh_actions.sh || code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi |