remove links for PIP-Seq and removes phase blocks for PIP-Seq v0, v1,… #231
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name: Test SCI-Seq | ||
on: workflow_dispach | ||
jobs: | ||
test: | ||
runs-on: ubuntu-20.04 | ||
steps: | ||
- uses: actions/checkout@v2 | ||
- name: Build the stack | ||
run: docker-compose up -d | ||
- name: Status | ||
run: echo "build complete" | ||
test-sci-seq: | ||
runs-on: ubuntu-20.04 | ||
steps: | ||
- uses: actions/checkout@v2 | ||
- uses: docker/setup-buildx-action@v1 | ||
- uses: docker/login-action@v1 | ||
with: | ||
username: ${{ secrets.DOCKER_HUB_USERNAME }} | ||
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | ||
registry: ${{ env.REGISTRY }} | ||
- name: Build and push | ||
uses: docker/build-push-action@v2 | ||
with: | ||
context: ./ | ||
file: ./Dockerfile | ||
tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test | ||
push: false | ||
- name: clear environment | ||
run: rm -rf * | ||
- name: Test SCI-Seq | ||
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 30m bash /universc/test/run_tests_sciseq_gh_actions.sh || code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi |