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1. ChIPseq_pipeline ChIPseq_pipeline Public

   A general ChIP-seq pipeline to reproducibly process many samples at once.

   Python 3

2. freddolino-lab/ShapeME freddolino-lab/ShapeME Public

   Algorithm to discover structural motifs informative of expression patterns

   HTML

3. freddolino-lab/2018_Lrp_ChIP freddolino-lab/2018_Lrp_ChIP Public

   Code used for the analysis of Lrp ChIP-seq and RNA-seq data

   Python 3

4. Strandedseq_pipeline Strandedseq_pipeline Public

   A reproducible pipeline for processing NGS data from stranded workflows including RNA-seq and NET-seq

   Python