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  1. ChIPseq_pipeline ChIPseq_pipeline Public

    A general ChIP-seq pipeline to reproducibly process many samples at once.

    Python 3

  2. freddolino-lab/ShapeME freddolino-lab/ShapeME Public

    Algorithm to discover structural motifs informative of expression patterns

    HTML

  3. freddolino-lab/2018_Lrp_ChIP freddolino-lab/2018_Lrp_ChIP Public

    Code used for the analysis of Lrp ChIP-seq and RNA-seq data

    Python 3

  4. Strandedseq_pipeline Strandedseq_pipeline Public

    A reproducible pipeline for processing NGS data from stranded workflows including RNA-seq and NET-seq

    Python