Round 18 submission for USC-SIkJalpha #240
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Validate and Visualize Submission | |
| on: | |
| pull_request_target: | |
| branches: | |
| - master | |
| jobs: | |
| validates-viz-files: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v1 | |
| - name: Install system dependencies | |
| run: sudo apt-get install libcurl4-openssl-dev libudunits2-dev libgdal-dev | |
| - name: Cache R packages | |
| id: cache | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/requirements.txt') }}-1 | |
| - name: Install dependencies | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| R -e 'Sys.setenv("NOT_CRAN" = TRUE) | |
| install.packages(c("arrow", "remotes")) | |
| remotes::install_url("https://github.com/midas-network/covid19SMHvalidation/archive/refs/heads/main.zip")' | |
| - name: Run Validation | |
| run: | | |
| Rscript code/validation/validation.R | |
| env: | |
| GH_PR_NUMBER: ${{ github.event.pull_request.number }} | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload Projection Plot as Artifact | |
| uses: actions/upload-artifact@v3 | |
| if: always() | |
| with: | |
| name: validation_plot_${{ github.event.pull_request.number }} | |
| path: ./proj_plot/* | |
| if-no-files-found: ignore |