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[ci] speed up conda setup for macOS and Linux jobs #5743

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merged 3 commits into from
Feb 26, 2023
Merged

[ci] speed up conda setup for macOS and Linux jobs #5743

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a9bf08c
[ci] speed up conda setup for macOS and Linux jobs
jameslamb Feb 25, 2023
8534da6
fix docs build
jameslamb Feb 25, 2023
a00aaf5
add missing 'source activate' in check-docs
jameslamb Feb 25, 2023
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16 changes: 8 additions & 8 deletions .ci/test.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -93,14 +93,9 @@ if [[ $TASK == "lint" ]]; then
exit 0
fi

conda create -q -y -n $CONDA_ENV "${CONDA_PYTHON_REQUIREMENT}"
source activate $CONDA_ENV

cd $BUILD_DIRECTORY

if [[ $TASK == "check-docs" ]] || [[ $TASK == "check-links" ]]; then
cd $BUILD_DIRECTORY/docs
conda env update \
conda env create \
-n $CONDA_ENV \
--file ./env.yml || exit -1
conda install \
Expand All @@ -109,6 +104,7 @@ if [[ $TASK == "check-docs" ]] || [[ $TASK == "check-links" ]]; then
-n $CONDA_ENV \
doxygen \
'rstcheck>=6.0.0' || exit -1
source activate $CONDA_ENV
# check reStructuredText formatting
cd $BUILD_DIRECTORY/python-package
rstcheck --report-level warning $(find . -type f -name "*.rst") || exit -1
Expand All @@ -131,8 +127,8 @@ if [[ $TASK == "check-docs" ]] || [[ $TASK == "check-links" ]]; then
exit 0
fi

# re-including python=version[build=*cpython] to ensure that conda doesn't fall back to pypy
conda install -q -y -n $CONDA_ENV \
# including python=version[build=*cpython] to ensure that conda doesn't fall back to pypy
conda create -q -y -n $CONDA_ENV \
cloudpickle \
dask-core \
distributed \
Expand All @@ -147,6 +143,10 @@ conda install -q -y -n $CONDA_ENV \
scikit-learn \
scipy || exit -1

source activate $CONDA_ENV

cd $BUILD_DIRECTORY

if [[ $OS_NAME == "macos" ]] && [[ $COMPILER == "clang" ]]; then
# fix "OMP: Error #15: Initializing libiomp5.dylib, but found libomp.dylib already initialized." (OpenMP library conflict due to conda's MKL)
for LIBOMP_ALIAS in libgomp.dylib libiomp5.dylib libomp.dylib; do sudo ln -sf "$(brew --cellar libomp)"/*/lib/libomp.dylib $CONDA_PREFIX/lib/$LIBOMP_ALIAS || exit -1; done
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