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r-package (windows-latest, MINGW, R 3.6, cran) CI job fails #5036

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Tracked by #5153
StrikerRUS opened this issue Feb 27, 2022 · 2 comments · Fixed by #5479
Closed
Tracked by #5153

r-package (windows-latest, MINGW, R 3.6, cran) CI job fails #5036

StrikerRUS opened this issue Feb 27, 2022 · 2 comments · Fixed by #5479
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maintenance r-package

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@StrikerRUS
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Current master branch logs:

2022-02-27T14:10:10.2027009Z [command]C:\Windows\System32\WindowsPowerShell\v1.0\powershell.exe -NoLogo -Sta -NoProfile -NonInteractive -ExecutionPolicy Unrestricted -Command "$ErrorActionPreference = 'Stop' ; try { Add-Type -AssemblyName System.IO.Compression.FileSystem } catch { } ; [System.IO.Compression.ZipFile]::ExtractToDirectory('D:\a\_temp\ab3810a3-16dc-4fed-a31e-9ae5a0411491', 'D:\a\_temp\2b709202-9ee1-412b-b85f-35881214033e')"
2022-02-27T14:10:15.7306408Z ##[group]Run $env:BUILD_SOURCESDIRECTORY = $env:GITHUB_WORKSPACE
2022-02-27T14:10:15.7307083Z �[36;1m$env:BUILD_SOURCESDIRECTORY = $env:GITHUB_WORKSPACE�[0m
2022-02-27T14:10:15.7307414Z �[36;1m$env:TOOLCHAIN = "MINGW"�[0m
2022-02-27T14:10:15.7307668Z �[36;1m$env:R_VERSION = "3.6"�[0m
2022-02-27T14:10:15.7307934Z �[36;1m$env:R_BUILD_TYPE = "cran"�[0m
2022-02-27T14:10:15.7308212Z �[36;1m$env:COMPILER = "MINGW"�[0m
2022-02-27T14:10:15.7308464Z �[36;1m$env:GITHUB_ACTIONS = "true"�[0m
2022-02-27T14:10:15.7308735Z �[36;1m$env:TASK = "r-package"�[0m
2022-02-27T14:10:15.7309032Z �[36;1m& "$env:GITHUB_WORKSPACE/.ci/test_windows.ps1"�[0m
2022-02-27T14:10:15.7357874Z shell: C:\Program Files\PowerShell\7\pwsh.EXE -command ". {0}"
2022-02-27T14:10:15.7358175Z env:
2022-02-27T14:10:15.7358404Z   _R_CHECK_SYSTEM_CLOCK_: 0
2022-02-27T14:10:15.7358661Z   _R_CHECK_CRAN_INCOMING_REMOTE_: 0
2022-02-27T14:10:15.7358946Z   _R_CHECK_PKG_SIZES_THRESHOLD_: 100
2022-02-27T14:10:15.7359250Z ##[endgroup]
2022-02-27T14:11:54.2348646Z Downloading R and Rtools
2022-02-27T14:11:54.2404226Z Downloading https://cran.r-project.org/bin/windows/base/old/3.6.3/R-3.6.3-win.exe
2022-02-27T14:12:04.0057947Z Downloading https://github.com/microsoft/LightGBM/releases/download/v2.0.12/rtools35-x86_64.exe
2022-02-27T14:12:10.1839831Z Installing R
2022-02-27T14:12:49.7812622Z Done installing R
2022-02-27T14:12:49.7814678Z Installing Rtools
2022-02-27T14:14:33.8605607Z Done installing Rtools
2022-02-27T14:14:33.8606807Z Installing dependencies
2022-02-27T14:14:36.5274913Z package 'utf8' successfully unpacked and MD5 sums checked
2022-02-27T14:14:36.5794292Z package 'pillar' successfully unpacked and MD5 sums checked
2022-02-27T14:14:36.5928163Z package 'pkgconfig' successfully unpacked and MD5 sums checked
2022-02-27T14:14:36.6461005Z package 'vctrs' successfully unpacked and MD5 sums checked
2022-02-27T14:14:36.6600360Z package 'mime' successfully unpacked and MD5 sums checked
2022-02-27T14:14:36.6781763Z package 'glue' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.1627213Z package 'stringi' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.1772539Z package 'base64enc' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.1963509Z package 'rprojroot' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.2213568Z package 'rstudioapi' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.2535621Z package 'diffobj' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.2724167Z package 'fansi' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.2849508Z package 'rematch2' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.3282264Z package 'tibble' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.3411844Z package 'evaluate' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.3557043Z package 'highr' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.3828632Z package 'markdown' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.4039131Z package 'stringr' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.4256410Z package 'yaml' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.4455970Z package 'xfun' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.4692687Z package 'ps' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.4856722Z package 'htmltools' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.4978022Z package 'tinytex' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.5110265Z package 'brio' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.5251763Z package 'callr' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.5459448Z package 'cli' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.5579822Z package 'crayon' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.5788196Z package 'desc' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.6047237Z package 'digest' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.6176390Z package 'ellipsis' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.6402262Z package 'lifecycle' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.6642951Z package 'magrittr' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.6761674Z package 'pkgload' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.6865674Z package 'praise' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.7172257Z package 'rlang' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.7280116Z package 'waldo' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.7456043Z package 'withr' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.8489029Z package 'data.table' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.8770954Z package 'jsonlite' successfully unpacked and MD5 sums checked
2022-02-27T14:14:37.9860860Z package 'knitr' successfully unpacked and MD5 sums checked
2022-02-27T14:14:38.1098179Z package 'Matrix' successfully unpacked and MD5 sums checked
2022-02-27T14:14:38.1372197Z package 'processx' successfully unpacked and MD5 sums checked
2022-02-27T14:14:38.1487902Z package 'R6' successfully unpacked and MD5 sums checked
2022-02-27T14:14:38.3627724Z package 'rmarkdown' successfully unpacked and MD5 sums checked
2022-02-27T14:14:38.4409961Z package 'testthat' successfully unpacked and MD5 sums checked
2022-02-27T14:14:38.4437491Z 
2022-02-27T14:14:38.4438167Z The downloaded binary packages are in
2022-02-27T14:14:38.4438887Z 	C:\Users\runneradmin\AppData\Local\Temp\RtmpSwJ69r\downloaded_packages
2022-02-27T14:14:38.4803780Z Downloading https://github.com/microsoft/LightGBM/releases/download/v2.0.12/miktexsetup-4.0-x64.zip
2022-02-27T14:14:44.6379328Z Setting up MiKTeX
2022-02-27T14:14:58.0816413Z Installing MiKTeX
2022-02-27T14:16:03.8528264Z Done installing MiKTeX
2022-02-27T14:16:04.2126195Z initexmf: security risk: running with elevated privileges
2022-02-27T14:16:04.2141765Z 
2022-02-27T14:16:04.4514430Z Building R package
2022-02-27T14:16:06.8302815Z Building lightgbm with R executable: R
2022-02-27T14:16:08.6565334Z Removing files not needed for CRAN
2022-02-27T14:16:08.9282424Z Removing unknown pragmas in headers
2022-02-27T14:16:17.6945174Z Changing lib_lightgbm to lightgbm
2022-02-27T14:16:18.1849288Z Cleaning sed backup files
2022-02-27T14:16:18.4745412Z * checking for file 'lightgbm_r/DESCRIPTION' ... OK
2022-02-27T14:16:18.4748540Z 
2022-02-27T14:16:19.4143953Z * preparing 'lightgbm':
2022-02-27T14:16:19.4144793Z 
2022-02-27T14:16:19.4289335Z * checking DESCRIPTION meta-information ... OK
2022-02-27T14:16:19.4290147Z 
2022-02-27T14:16:19.4533112Z * cleaning src
2022-02-27T14:16:19.4533652Z 
2022-02-27T14:16:19.5970297Z * installing the package to build vignettes
2022-02-27T14:16:19.5970773Z 
2022-02-27T14:19:53.9150776Z * creating vignettes ... OK
2022-02-27T14:19:53.9151853Z 
2022-02-27T14:19:53.9490445Z * cleaning src
2022-02-27T14:19:53.9490909Z 
2022-02-27T14:19:54.2784402Z * checking for LF line-endings in source and make files and shell scripts
2022-02-27T14:19:54.2785694Z 
2022-02-27T14:19:55.2123182Z * checking for empty or unneeded directories
2022-02-27T14:19:55.2124427Z 
2022-02-27T14:19:55.2541130Z * looking to see if a 'data/datalist' file should be added
2022-02-27T14:19:55.2541793Z 
2022-02-27T14:19:55.2743361Z * building 'lightgbm_3.3.2.99.tar.gz'
2022-02-27T14:19:55.2743796Z 
2022-02-27T14:19:55.4260967Z Warning: file 'lightgbm/cleanup' did not have execute permissions: corrected
2022-02-27T14:19:55.4265407Z 
2022-02-27T14:19:55.4266360Z Warning: file 'lightgbm/configure' did not have execute permissions: corrected
2022-02-27T14:19:55.4266826Z 
2022-02-27T14:19:59.0452604Z 
2022-02-27T14:19:59.0452866Z 
2022-02-27T14:19:59.2061162Z removing object files created by vignettes
2022-02-27T14:19:59.3380405Z untarring lightgbm_3.3.2.99.tar.gz
2022-02-27T14:20:00.4079355Z done untarring lightgbm_3.3.2.99.tar.gz
2022-02-27T14:20:00.4080411Z re-tarring lightgbm_3.3.2.99.tar.gz
2022-02-27T14:20:00.5002054Z Running R CMD check
2022-02-27T14:20:01.0272005Z * using log directory 'C:/tmp-r-cmd-check/lightgbm.Rcheck'
2022-02-27T14:20:01.0272509Z 
2022-02-27T14:20:01.0274700Z * using R version 3.6.3 (2020-02-29)
2022-02-27T14:20:01.0279827Z 
2022-02-27T14:20:01.0281345Z * using platform: x86_64-w64-mingw32 (64-bit)
2022-02-27T14:20:01.0286397Z 
2022-02-27T14:20:01.0287692Z * using session charset: ISO8859-1
2022-02-27T14:20:01.0288008Z 
2022-02-27T14:20:01.0320023Z * checking package directory ... ERROR
2022-02-27T14:20:01.0322453Z 
2022-02-27T14:20:01.0331915Z package directory 'C:/tmp-r-cmd-check/lightgbm.Rcheck/00_pkg_src/lightgbm' does not exist
2022-02-27T14:20:01.0335281Z 
2022-02-27T14:20:01.0335674Z * DONE
2022-02-27T14:20:01.0335950Z 
2022-02-27T14:20:01.0937328Z 
2022-02-27T14:20:01.0937585Z 
2022-02-27T14:20:01.0945878Z Status: 1 ERROR
2022-02-27T14:20:01.0946735Z 
2022-02-27T14:20:01.0951808Z See
2022-02-27T14:20:01.0952119Z 
2022-02-27T14:20:01.0952782Z   'C:/tmp-r-cmd-check/lightgbm.Rcheck/00check.log'
2022-02-27T14:20:01.0953106Z 
2022-02-27T14:20:01.0953292Z for details.
2022-02-27T14:20:01.0953580Z 
2022-02-27T14:20:01.0954139Z 
2022-02-27T14:20:01.0954288Z 
2022-02-27T14:20:01.1177089Z R CMD check build logs:
2022-02-27T14:20:01.9827544Z �[91mGet-Content: �[0mD:\a\LightGBM\LightGBM\.ci\test_r_package_windows.ps1:198
2022-02-27T14:20:01.9828594Z �[96mLine |
2022-02-27T14:20:01.9829168Z �[96m 198 | �[0m   �[96mGet-Content -Path "$INSTALL_LOG_FILE_NAME"�[0m
2022-02-27T14:20:01.9829804Z �[96m     | �[91m   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-02-27T14:20:01.9831510Z �[91m�[96m     | �[91mCannot find path 'C:\tmp-r-cmd-check\lightgbm.Rcheck\00install.out' because it does not exist.
2022-02-27T14:20:01.9832246Z �[0m
2022-02-27T14:20:02.0602081Z ##[error]Process completed with exit code 1.

https://github.com/microsoft/LightGBM/runs/5350688376?check_suite_focus=true

cc @jameslamb
@jameslamb
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Thanks for @-ing me! I'll look at this in a few hours and try to help.

This was referenced Feb 28, 2022
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@jameslamb jameslamb removed the blocking label Apr 3, 2022
@jameslamb jameslamb mentioned this issue Apr 14, 2022
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jameslamb added a commit that referenced this issue Sep 10, 2022
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[R-package] [ci] restore R 3.6 Windows cran CI job (fixes #5036)
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@jameslamb jameslamb mentioned this issue Sep 10, 2022
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jameslamb added a commit that referenced this issue Sep 12, 2022
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[R-package] [ci] restore R 3.6 Windows cran CI job (fixes #5036) (#5479)
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This issue has been automatically locked since there has not been any recent activity since it was closed. To start a new related discussion, open a new issue at https://github.com/microsoft/LightGBM/issues including a reference to this.

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[R-package] [ci] restore R 3.6 Windows cran CI job (fixes #5036) microsoft/LightGBM
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@jameslamb @StrikerRUS