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Create R notebook to explore processed NOM data #34

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kheal opened this issue May 8, 2024 · 0 comments · Fixed by #69
Closed
1 of 4 tasks

Create R notebook to explore processed NOM data #34

kheal opened this issue May 8, 2024 · 0 comments · Fixed by #69
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@bmeluch

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kheal commented May 8, 2024 •
edited by bmeluch
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We should add an additional R notebook to do some basic data exploration of processed data beyond metagenomics data.

Sister issue to #33, contingent on microbiomedata/issues#725.

  • Investigate how to move API call functions out of notebooks and into a shared file
  • Implement API call functions to traverse NMDC schema from processed NOM data up to biosamples
  • Choose data to use based on biosample characteristics
  • Develop visualizations of selected processed data
@kheal kheal self-assigned this May 8, 2024
@kheal kheal changed the title Create R notebook to explore processed data for a second 'omics data typ Create R notebook to explore processed data for a second 'omics data type May 31, 2024
@kheal kheal assigned bmeluch and unassigned kheal Jun 13, 2024
@bmeluch bmeluch changed the title Create R notebook to explore processed data for a second 'omics data type Create R notebook to explore processed NOM data Jul 11, 2024
@bmeluch bmeluch linked a pull request Sep 10, 2024 that will close this issue
Add R notebook exploring natural organic matter data #69
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2024 - Sprint 46 - September 23 - October 4, 2024
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Add R notebook exploring natural organic matter data microbiomedata/nmdc_notebooks
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@kheal @bmeluch