import automation not working from an interactive node

[aclum]

I switched from a login node to an interactive now and now import automation is not correctly making the outputs.
Note this can't be rerun as is b/c it will incorrectly push another data object record to has_output for the data_generation_set record.

/global/cfs/cdirs/m3408/users/nmdcda/repos/clone/nmdc_automation> poetry run python nmdc_automation/run_process/run_import.py import-projects /global/homes/n/nmdcda/m3408/aim2/dev/1000_soils/1000_soils_analysis_projects/ingest_manifest_continue.tsv configs/import.yaml.1 configs/site_configuration.toml
INFO:__main__:Importing project from /global/homes/n/nmdcda/m3408/aim2/dev/1000_soils/1000_soils_analysis_projects/ingest_manifest_continue.tsv
INFO:__main__:Importing nmdc:omprc-12-mm525w16 from /global/cfs/cdirs/m3408/aim2/dev/1000_soils/1000_soils_analysis_projects/Ga0533584
INFO:__main__:Mapping sequencing data
INFO:nmdc_automation.import_automation.activity_mapper:Adding Sequencing data to Map: nmdc:dobj-11-96cke247
INFO:__main__:Mapping single data files
INFO:nmdc_automation.import_automation.activity_mapper:Processing Metagenome Raw Reads
WARNING:root:Import not enabled for nmdc:NucleotideSequencing Metagenome Raw Reads
INFO:nmdc_automation.import_automation.activity_mapper:Processing CheckM Statistics
WARNING:root:Import not enabled for nmdc:MagsAnalysis CheckM Statistics
INFO:nmdc_automation.import_automation.activity_mapper:Processing GTDBTK Bacterial Summary
WARNING:root:Import not enabled for nmdc:MagsAnalysis GTDBTK Bacterial Summary
INFO:nmdc_automation.import_automation.activity_mapper:Processing GTDBTK Archaeal Summary
WARNING:root:Import not enabled for nmdc:MagsAnalysis GTDBTK Archaeal Summary
INFO:nmdc_automation.import_automation.activity_mapper:Processing Annotation Amino Acid FASTA
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Annotation Amino Acid FASTA
INFO:nmdc_automation.import_automation.activity_mapper:Processing Contig Mapping File
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Contig Mapping File
INFO:nmdc_automation.import_automation.activity_mapper:Processing Structural Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Structural Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing Functional Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Functional Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing Annotation KEGG Orthology
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Annotation KEGG Orthology
INFO:nmdc_automation.import_automation.activity_mapper:Processing Annotation Enzyme Commission
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Annotation Enzyme Commission
INFO:nmdc_automation.import_automation.activity_mapper:Processing Clusters of Orthologous Groups (COG) Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Clusters of Orthologous Groups (COG) Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing Pfam Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Pfam Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing TIGRFam Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation TIGRFam Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing SMART Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation SMART Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing SUPERFam Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation SUPERFam Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing CATH FunFams (Functional Families) Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation CATH FunFams (Functional Families) Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing CRT Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation CRT Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing Genemark Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Genemark Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing Prodigal Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Prodigal Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing TRNA Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation TRNA Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing RFAM Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation RFAM Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing KO_EC Annotation GFF
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation KO_EC Annotation GFF
INFO:nmdc_automation.import_automation.activity_mapper:Processing Product Names
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Product Names
INFO:nmdc_automation.import_automation.activity_mapper:Processing Gene Phylogeny tsv
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Gene Phylogeny tsv
INFO:nmdc_automation.import_automation.activity_mapper:Processing Crispr Terms
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Crispr Terms
INFO:nmdc_automation.import_automation.activity_mapper:Processing Annotation Statistics
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Annotation Statistics
INFO:nmdc_automation.import_automation.activity_mapper:Processing Annotation Info File
WARNING:root:Import not enabled for nmdc:MetagenomeAnnotation Annotation Info File
INFO:nmdc_automation.import_automation.activity_mapper:Processing Filtered Sequencing Reads
INFO:nmdc_automation.import_automation.activity_mapper:Processing QC Statistics
INFO:nmdc_automation.import_automation.activity_mapper:Processing Read Filtering Info File
INFO:nmdc_automation.import_automation.activity_mapper:Processing Assembly Contigs
INFO:nmdc_automation.import_automation.activity_mapper:Processing Assembly Scaffolds
INFO:nmdc_automation.import_automation.activity_mapper:Processing Assembly Info File
INFO:nmdc_automation.import_automation.activity_mapper:Processing Assembly Coverage Stats
INFO:nmdc_automation.import_automation.activity_mapper:Processing Assembly AGP
INFO:nmdc_automation.import_automation.activity_mapper:Processing Assembly Coverage BAM
INFO:nmdc_automation.import_automation.activity_mapper:Processing Error Corrected Reads
INFO:nmdc_automation.import_automation.activity_mapper:Processing GOTTCHA2 Report Full
WARNING:root:Import not enabled for nmdc:ReadBasedTaxonomyAnalysis GOTTCHA2 Report Full
INFO:nmdc_automation.import_automation.activity_mapper:Processing GOTTCHA2 Classification Report
WARNING:root:Import not enabled for nmdc:ReadBasedTaxonomyAnalysis GOTTCHA2 Classification Report
INFO:nmdc_automation.import_automation.activity_mapper:Processing GOTTCHA2 Krona Plot
WARNING:root:Import not enabled for nmdc:ReadBasedTaxonomyAnalysis GOTTCHA2 Krona Plot
INFO:nmdc_automation.import_automation.activity_mapper:Processing Centrifuge Taxonomic Classification
WARNING:root:Import not enabled for nmdc:ReadBasedTaxonomyAnalysis Centrifuge Taxonomic Classification
INFO:nmdc_automation.import_automation.activity_mapper:Processing Centrifuge output report file
WARNING:root:Import not enabled for nmdc:ReadBasedTaxonomyAnalysis Centrifuge output report file
INFO:nmdc_automation.import_automation.activity_mapper:Processing Centrifuge Krona Plot
WARNING:root:Import not enabled for nmdc:ReadBasedTaxonomyAnalysis Centrifuge Krona Plot
INFO:nmdc_automation.import_automation.activity_mapper:Processing Kraken2 Classification Report
WARNING:root:Import not enabled for nmdc:ReadBasedTaxonomyAnalysis Kraken2 Classification Report
INFO:nmdc_automation.import_automation.activity_mapper:Processing Kraken2 Taxonomic Classification
WARNING:root:Import not enabled for nmdc:ReadBasedTaxonomyAnalysis Kraken2 Taxonomic Classification
INFO:nmdc_automation.import_automation.activity_mapper:Processing Kraken2 Krona Plot
WARNING:root:Import not enabled for nmdc:ReadBasedTaxonomyAnalysis Kraken2 Krona Plot
INFO:__main__:Mapping multiple data files
INFO:nmdc_automation.import_automation.activity_mapper:Processing Metagenome HQMQ Bins Compression File
WARNING:root:Import not enabled for nmdc:MagsAnalysis Metagenome HQMQ Bins Compression File
INFO:__main__:Mapping workflow executions
INFO:root:Processing Reads QC
ERROR:root:Skipping Reads QC due to missing inputs or outputs
ERROR:nmdc_automation.import_automation.activity_mapper:Inputs: ['nmdc:dobj-11-96cke247']
ERROR:nmdc_automation.import_automation.activity_mapper:Outputs: []
INFO:root:Processing Metagenome Assembly
ERROR:root:Skipping Metagenome Assembly due to missing inputs or outputs
ERROR:nmdc_automation.import_automation.activity_mapper:Inputs: []
ERROR:nmdc_automation.import_automation.activity_mapper:Outputs: []
INFO:__main__:Validating imported data
INFO:__main__:Validation Passed
INFO:__main__:Applying update to sequencing data generation
INFO:__main__:Posting data to the API