Implement MetaTranscriptomics Workflow

[mbthornton-lbl]

blockers are resolved on runtime dev, expected release to prod 7/29
blocked on microbiomedata/nmdc-schema#1000
blocked on microbiomedata/nmdc-schema#708

[ssarrafan]

@mbthornton-lbl This looks like a large task. Can it be broken down into smaller tasks that can be completed in 2 weeks?

[aclum]

This should be blocked on schema updates, we don't currently have all the output file types so this can't be completed yet.

[aclum]

Dependent tasks are expected to be resolved this week. Earliest this would be able to be tested in dev would be the week of July 22 which is when runtime dev would have the schema updates.

[aclum]

discussed this w/Shane this afternoon. First task would be to make a workflows-mt.yaml (name TBD). Next task would be update code to look back at the OmicsProcessing record to determine if omics_type.has_raw_value is Metagenome or Metatranscriptome

[aclum]

@mbthornton-lbl we need to implement this outside of berkeley, then make sure it gets updated for berkeley.

[ssarrafan]

What's the status of this? Is this being done this sprint? @aclum @mbthornton-lbl

[aclum]

This PR is still in review and needs input from Shane #223 once that is done the scheduler logic needs to be updated and tested.

[ssarrafan]

#223 and both blockers listed above are all closed. Can this issue be completed and closed today? @aclum @mbthornton-lbl

[ssarrafan]

@mbthornton-lbl any update on this issue?