Remove obsolete code, env vars, container related to TerminusDB

[eecavanna]

Tasks

• Remove code specific to TerminusDB (can move to long-lived branch if want to preserve)
• Remove environment variables specific to TerminusDB
• Delete those environment variables from deployments (@eecavanna can help with this on Rancher, given the list of environment variables)
• Remove terminus service ("container") from development stack

Examples

This is not an exhaustive list.

nmdc-runtime/nmdc_runtime/api/db/terminus.py

Line 10 in fb91316

def get_terminus_db():

nmdc-runtime/nmdc_runtime/site/graphs.py

Line 91 in fb91316

def update_terminus():

nmdc-runtime/nmdc_runtime/site/resources.py

Line 517 in fb91316

class TerminusDB:

nmdc-runtime/terminusdb

Line 3 in fb91316

docker exec -i terminus ./terminusdb "$@"

nmdc-runtime/nmdc_runtime/site/terminusdb/generate.py

Line 84 in fb91316

class TerminusdbGenerator(Generator):

nmdc-runtime/nmdc_runtime/site/terminusdb/.TDB

Line 1 in fb91316

{"branch": "main", "ref": null}

nmdc-runtime/nmdc_runtime/site/entrypoint-dagit.sh

Line 24 in fb91316

file_env "TERMINUS_KEY"

nmdc-runtime/docker-compose.yml

Lines 91 to 104 in fb91316

	terminus:
	image: terminusdb/terminusdb-server:v11.0.6
	container_name: terminus
	ports:
	- "6364:6363"
	tty: true
	volumes:
	- nmdc_runtime_terminus_data:/app/terminusdb/storage
	restart: unless-stopped
	environment:
	TERMINUSDB_SERVER_PORT: 6363
	TERMINUSDB_ADMIN_PASS: root
	TERMINUSDB_AUTOLOGIN_ENABLED: "true"
	TERMINUSDB_HTTPS_ENABLED: "false"

etc.

Suggestion: Use GitHub's search feature to search the repo for TERMINUS.