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review ETL scripts to exclude slot name if the value is empty or null #373

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aclum opened this issue Nov 10, 2023 · 1 comment
Open
3 tasks

review ETL scripts to exclude slot name if the value is empty or null #373

aclum opened this issue Nov 10, 2023 · 1 comment
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@sujaypatil96 @pkalita-lbl

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@aclum
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aclum commented Nov 10, 2023 •
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Please review ingest pipelines to exclude slots if the value of the slot is an empty list or has a value of null. Based on a review of the data in mongo this has happened in the past with the following slots. These could have come from other ingest code (ie EMSL ingest, there will be a separate ticket for workflows).

study_set gold_study_identifiers
omics_processing_set,gold_sequencing_project_identifiers
biosample_set,gold_biosample_identifiers
data_object_set,alternative_identifiers

ingest pipelines to review

  • GOLD ETL
  • NEON ETL
  • submission portal ETL

related to microbiomedata/nmdc-schema#1306
@aclum aclum changed the title review ETL scripts to exclude slot name if the list is empty review ETL scripts to exclude slot name if the value is empty or null Jan 30, 2024
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aclum commented Oct 1, 2024

Specific example with orcid for submission portal code here #711

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