Skip to content
This repository has been archived by the owner on Apr 19, 2024. It is now read-only.

Update existing DataObject JSON #212

Open
dehays opened this issue Jan 14, 2021 · 4 comments
Open

Update existing DataObject JSON #212

dehays opened this issue Jan 14, 2021 · 4 comments
Assignees

Comments

@dehays
Copy link
Contributor

dehays commented Jan 14, 2021

include URL values for all files supporting downloadability

@dehays
Copy link
Contributor Author

dehays commented Jan 15, 2021

None of the JSON for DataObjects in nmdc-metadata/blob/master/metadata-translation/src/data/nmdc_database.json.zip include the URL property necessary for downloading. All fastq, raw EMSL, qc, assembly files that are intended for download need to be wrapped in DataObjects that include the URL property

@cmungall
Copy link
Contributor

url is already present in DataObject https://microbiomedata.github.io/nmdc-metadata/DataObject/ - can we close this?

@dehays
Copy link
Contributor Author

dehays commented Jan 15, 2021

@cmungall This issue is about instances of DataObject that have already been created and need to be updated based on information regarding file location. As you say, URL is present in the schema - added this when I closed #173

@dehays
Copy link
Contributor Author

dehays commented Jan 15, 2021

@scanon You are the person with the information necessary to do this update as you are the person who is setting the locations of files on CFS. Is it on your radar to do this for the existing files - raw read fastq on down? If needed, we can deal with the JSON object updates if you can provide the file/DataObject ID --> URL information.

Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants