Curate metadata mapping for lipidomics data for nmdc:sty-11-aygzgv51, nmdc:sty-11-dcqce727, and nmdc:sty-11-8ws97026

[kheal]

Deliverable this task is associated with

Completed metadata .csvs - see here for example (https://code.emsl.pnl.gov/mass-spectrometry/metams/-/blob/lipid_dev/metaMS/nmdc_lipidomics_metadata_generation/example_metadata_file.csv?ref_type=heads).

Mapping to biosamples is complete, we just need to map to configurations and MassSpectrometry metadata.

Mappings to biosamples and emsl IDs are here for the first two: https://drive.google.com/file/d/17-bmINtMmYdq-9XfnxJf0ia26LH4nAzy/view?usp=drive_link

Mappings for biosamples and DMS dataset names for nmdc:sty-11-8ws97026 are linked in this ticket: #955

RACI

Tag people in their roles

• Responsible: @bmeluch
• Accountable: @lamccue
• Consulted: @kheal
• Informed: @aclum

Describe the the task

• Complete metadata mapping for lipidomics datasets for nmdc:sty-11-aygzgv51
• Complete metadata mapping for lipidomics datasets for nmdc:sty-11-dcqce727
• Complete metadata mapping for lipidomics datasets for nmdc:sty-11-8ws97026

Criteria for completion

• Mapping files should be reviewed and OK'd by @kheal and be functional with the lipidomics metadata generation scripts (here: https://code.emsl.pnl.gov/mass-spectrometry/metams/-/blob/lipid_dev/metaMS/nmdc_lipidomics_metadata_generation/main.py?ref_type=heads).

Estimate people time

• 1 person, 8 hours

Completion Date (Goal)

• Dec 13

Target Sprint Start & End Dates

• Start: Dec 2
• End: Dec 13

Contingent upon issues

• Process 86 lipidomics datasets for nmdc:sty-11-dcqce727 (Brodie) #939
• Process 63 lipidomics datasets for nmdc:sty-11-aygzgv51 (Stegen) #938

[bmeluch]

Done! @kheal is there somewhere I should upload these?

[kheal]

@bmeluch - good question. I don't think there's a place right now that makes sense. I have them in a safe place locally (including your script, thank you!). Wouldn't hurt to drop them in this issue for extra safe keeping.

[bmeluch]

nmdc_sty-11-dcqce727.csv
nmdc_sty-11-aygzgv51.csv
nmdc_sty-11-8ws97026.csv
lipidomics_metadata_Dec2024_R.txt