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added some code to catch malformed edit_map and exons with size 1 #4

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gernophil wants to merge 1 commit into mhegde:master from gernophil:master

gernophil commented Aug 10, 2023

I made some bug fixes:

Sometimes e['end']==int(ce_start), but this case is not taken into account with the original script.
Sometimes the edit_map is an empty string leading to an error (see here: 'str' has no attribute 'iteritems' #3). This is avoided by converting the empty string to an empty dictionary.
Sometimes the edit_map becomes malformed leading to an error. This is avoided by simply dropping this entry.


          added some code to catch malformed edit_map and exons with size 1

a753546

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