doc files are now a web site.

mhahsler · May 15, 2024 · a694b45 · a694b45
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diff --git a/README.Rmd b/README.Rmd
@@ -28,9 +28,9 @@ Here are some quick guides on applications of seriation:
 
 Implemented seriation methods and criteria:
 
-* [Documentation of the implemented seriation methods](https://mhahsler.github.io/seriation/seriation_methods.html)
-* [Documentation of the implemented seriation criteria](https://mhahsler.github.io/seriation/seriation_criteria.html)
-* [A visual comparison between seriation methods](https://mhahsler.github.io/seriation/visual_comparison.html)
+* [Documentation of the implemented seriation methods](https://mhahsler.github.io/seriation/_site/seriation_methods.html)
+* [Documentation of the implemented seriation criteria](https://mhahsler.github.io/seriation/_site/seriation_criteria.html)
+* [A visual comparison between seriation methods](https://mhahsler.github.io/seriation/_site/comparison.html)
 
 ```{r echo=FALSE, results = 'asis'}
 pkg_usage(pkg)

diff --git a/docs/.gitignore b/docs/.gitignore
@@ -0,0 +1 @@
+/.quarto/
diff --git a/docs/_quarto.yml b/docs/_quarto.yml
@@ -0,0 +1,43 @@
+project:
+  type: website
+  render:
+    - seriation_methods.qmd
+    - seriation_criteria.qmd
+    - heatmaps.qmd
+    - correlation_matrix.qmd
+    - clustering.qmd
+    - comparison.qmd
+
+website:
+  title: "R Package Seriation"
+  sidebar:
+    style: "docked"
+    search: true
+    contents:
+      - section: "Package"
+        contents:
+        - text: Package Overview
+          href: https://github.com/mhahsler/seriation
+      - section: "Methods and Criteria"
+        contents:
+        - text: Methods
+          href: seriation_methods.qmd
+        - text: Criteria
+          href: seriation_criteria.qmd
+        - text: Comparison
+          href: comparison.qmd
+      - section: "Quick Guides"
+        contents:
+        - text: Introduction
+          href: https://cran.r-project.org/web/packages/seriation/vignettes/seriation.pdf
+        - text: How to reorder heatmaps
+          href: heatmaps.qmd
+        - text: How to reorder correlation matrices
+          href: correlation_matrix.qmd
+        - text: How to evaluate clusters using dissimilarity plots
+          href: clustering.qmd
+
+format:
+  html:
+    theme: cosmo
+    toc: true
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   <li><a href="#introduction" id="toc-introduction" class="nav-link active" data-scroll-target="#introduction">Introduction</a></li>
@@ -92,7 +230,8 @@ <h2 id="toc-title">Table of contents</h2>
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 <ul>
 <li>Hahsler, M. and Hornik, K. (2011): Dissimilarity plots: A visual exploration tool for partitional clustering. <em>Journal of Computational and Graphical Statistics,</em> <strong>10</strong>(2):335–354. <a href="http://dx.doi.org/10.1198/jcgs.2010.09139">doi:10.1198/jcgs.2010.09139</a> (read the <a href="http://michael.hahsler.net/research/paper/dissplot_JCGS2011_preprint.pdf">preprint</a>)</li>
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diff --git a/...tion_files/libs/quarto-html/popper.min.js → ...tion_files/libs/quarto-html/popper.min.js b/...tion_files/libs/quarto-html/popper.min.js → ...tion_files/libs/quarto-html/popper.min.js
diff --git a/...uarto-html/quarto-syntax-highlighting.css → ...uarto-html/quarto-syntax-highlighting.css b/...uarto-html/quarto-syntax-highlighting.css → ...uarto-html/quarto-syntax-highlighting.css
diff --git a/...aluation_files/libs/quarto-html/quarto.js → ...aluation_files/libs/quarto-html/quarto.js b/...aluation_files/libs/quarto-html/quarto.js → ...aluation_files/libs/quarto-html/quarto.js
diff --git a/...aluation_files/libs/quarto-html/tippy.css → ...aluation_files/libs/quarto-html/tippy.css b/...aluation_files/libs/quarto-html/tippy.css → ...aluation_files/libs/quarto-html/tippy.css
diff --git a/...n_files/libs/quarto-html/tippy.umd.min.js → ...n_files/libs/quarto-html/tippy.umd.min.js b/...n_files/libs/quarto-html/tippy.umd.min.js → ...n_files/libs/quarto-html/tippy.umd.min.js