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BioDRUMS

This project builds up on DRUMS. It extends it by parsers for HitFiles generated by BLAST and SNPFiles from http://1001genomes.org. In addition, concrete implementations of the AbstractKVStorable class in DRUMS are provided. Those are needed to store SNP data and HERV data. Furthermore, this project provides an extensivly documented read- and write-tutorial with example data.

Please, see DRUMS for details.

Benchmarks

Instructions for benchmarks performed in the paper "DRUMS: Disk Repository with Update Management, for high throughput sequencing data" can be found here:

• Insert Benchmark
• Random Lookups Benchmark
• Range Select Benchmark