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random_scripts

gpx_to_tsv.py

Takes all gpx files from current folder and produces a tsv (tab-separated values) file containin the id, long, lat, elevation, and time of the waypoints from these files.
Libraries used: gpxpy, glob.

extract_reads_by_contig.sh

Extracts reads aligning to a list of contigs and their mates wherever they are.
Libraries used: samtools, bbmap.

batch_rename_files.R

An R script that renames files in a given folder based on a tsv table with new and old names (minus file extensions). The script preserves file extentions.
Libraries used: dplyr, purrr.

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