Optimized unit tests #65
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - ".github/workflows/unit-tests.yml" | |
| - "tests/**" | |
| - "mess/**" | |
| - "setup.py" | |
| - "!.github/workflows/build-docs.yml" | |
| - "!docs/**" | |
| - "!mkdocs.yml" | |
| - "!README.md" | |
| pull_request: | |
| paths: | |
| - ".github/workflows/unit-tests.yml" | |
| - "tests/**" | |
| - "mess/**" | |
| - "setup.py" | |
| - "!.github/workflows/build-docs.yml" | |
| - "!docs/**" | |
| - "!mkdocs.yml" | |
| - "!README.md" | |
| permissions: | |
| contents: read | |
| jobs: | |
| tests: | |
| name: "Python ${{ matrix.python-version }} on ${{ matrix.os }}" | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup apptainer | |
| uses: eWaterCycle/[email protected] | |
| - name: Setup pip | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" # caching pip dependencies | |
| cache-dependency-path: setup.py | |
| - name: Install MeSS and pytest-cov | |
| run: | | |
| pip install -e . | |
| pip install pytest coverage | |
| - name: Cache apptainer containers | |
| uses: actions/cache@v3 | |
| with: | |
| path: .snakemake/apptainer # Cache the Apptainer containers directory | |
| key: ${{ runner.os }}-apptainer-${{ hashFiles('mess/workflow/envs/containers.yml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-apptainer- | |
| - name: Run tests on ${{ matrix.os }} for python ${{ matrix.python-version }} | |
| run: | | |
| coverage run -m pytest |