Update LOCI links to follow external site migration.

melissalinkert · Sep 15, 2020 · 28eec18 · 28eec18
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diff --git a/sphinx/about/index.rst b/sphinx/about/index.rst
@@ -14,9 +14,9 @@ model <http://genomebiology.com/2005/6/5/R47>`_, particularly into the
 :model_doc:`OME-TIFF <ome-tiff>` file format.
 
 We believe the standardization of microscopy metadata to a common
-structure is of vital importance to the community. You may find LOCI's article
-on `open source software in
-science <https://loci.wisc.edu/software/oss>`_ of interest.
+structure is of vital importance to the community. You may find LOCI's
+article on `open source software in science
+<https://uw-loci.github.io/oss>`_ of interest.
 
 License, copyright, and citation
 --------------------------------
@@ -137,14 +137,14 @@ and C++ for many of its components (e.g., NumPy and SciPy), Java code is
 compiled one time into platform-independent byte code, which can be deployed
 as is to all supported platforms. And despite this enormous flexibility, Java
 manages to provide time performance nearly equal to C++, often better in the
-case of I/O operations (see further discussion on the
-`comparative speed of Java on the LOCI site <https://loci.wisc.edu/faq/isnt-java-too-slow>`_).
+case of I/O operations (see further discussion on the `comparative speed
+of Java on the LOCI site <https://uw-loci.github.io/why-java>`_).
 
 There are also historical reasons associated with the fact that the project
 grew out of work on the
 `VisAD Java component library <http://visad.ssec.wisc.edu>`_. You can read
 more about the origins of Bio-Formats on the
-`LOCI Bio-Formats homepage <https://loci.wisc.edu/software/bio-formats>`_.
+`LOCI Bio-Formats homepage <https://eliceirilab.org/software/bio-formats/>`_.
 
 Bio-Formats metadata processing
 -------------------------------

diff --git a/sphinx/developers/non-java-code.rst b/sphinx/developers/non-java-code.rst
@@ -8,9 +8,9 @@ in another language. But how to do so depends on your program's needs.
 Technologically, there are two broad categories of solutions:
 **in-process** approaches, and **inter-process** communication.
 
-For details, see LOCI's article
+For details, see LOCI's article,
 `Interfacing from non-Java code
-<http://loci.wisc.edu/software/interfacing-non-java-code>`_.
+<https://uw-loci.github.io/interfacing-non-java-code>`_.
 
 Example **in-process solution**: `Bio-Formats JACE C++ bindings <https://github.com/ome/bio-formats-jace>`_
 (note that this is a legacy project and no longer actively maintained).

diff --git a/sphinx/users/imagej/load-images.rst b/sphinx/users/imagej/load-images.rst
@@ -76,10 +76,9 @@ Group files with similar names
 One of the most important features of Bio-Formats is to combine multiple
 files from a data set into one coherent, multi-dimensional image.
 
-To demonstrate how to use the **Group files with similar
-names** feature, you can use the `dub <http://loci.wisc.edu/sample-data/dub>`_
-data set available under LOCI’s `Sample
-Data <http://loci.wisc.edu/software/sample-data>`_ page. You will
+To demonstrate how to use the **Group files with similar names**
+feature, you can use the *dub* data set available under LOCI’s
+`Sample Data <https://scif.io/images/>`_ page. You will
 notice that it is a large dataset: each of the 85 files shows the
 specimen at 33 optical sections along the z-plane at a specific time.
 

diff --git a/sphinx/users/visbio/index.rst b/sphinx/users/visbio/index.rst
@@ -1,7 +1,7 @@
 VisBio
 ======
 
-`VisBio <http://loci.wisc.edu/software/visbio>`_ is a biological
+`VisBio <https://eliceirilab.org/visbio/>`_ is a biological
 visualization tool designed for easy visualization and analysis of
 multidimensional image data. VisBio uses Bio-Formats to import
 files as the Bio-Formats library originally grew out of our