remove transpose+copy

recOrder/compute/reconstructions.py

@@ -321,21 +321,10 @@ def reconstruct_qlipp_birefringence(stokes, recon):
                               volume of shape (C, Z, Y, X) or (C, Y, X) containing reconstructed birefringence data.
     """
 
-    if stokes.ndim == 4:
-        stokes = np.transpose(stokes, (0, 2, 3, 1))
-    elif stokes.ndim == 3:
-        pass
-    else:
+    if stokes.ndim != 4 and stokes.ndim != 3:
         raise ValueError(f"Incompatible stokes dimension: {stokes.shape}")
 
-    birefringence = recon.Polarization_recon(np.copy(stokes))
-
-    # Return the transposed birefringence array with channel first
-    return (
-        np.transpose(birefringence, (-4, -1, -3, -2))
-        if len(birefringence.shape) == 4
-        else birefringence
-    )
+    return recon.Polarization_recon(stokes)
 
 
 def reconstruct_phase2D(