docs: fix ReadTheDocs build

* Adds `config.py` so that pykube configuration is loaded only at
  run time. (closes reanahub#18)

* Renames `create_job` on `k8s.py` to avoid name clashing inside
  `app.py`.

Signed-off-by: Diego Rodriguez <[email protected]>

MANIFEST.in

@@ -22,6 +22,7 @@ include Dockerfile
 include COPYING
 include *.rst
 include *.sh
+include *.py
 include pytest.ini
 recursive-include reana_job_controller *.json
 recursive-include docs *.py

config.py

@@ -0,0 +1,29 @@
+# -*- coding: utf-8 -*-
+#
+# This file is part of REANA.
+# Copyright (C) 2017 CERN.
+#
+# REANA is free software; you can redistribute it and/or modify it under the
+# terms of the GNU General Public License as published by the Free Software
+# Foundation; either version 2 of the License, or (at your option) any later
+# version.
+#
+# REANA is distributed in the hope that it will be useful, but WITHOUT ANY
+# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
+# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along with
+# REANA; if not, write to the Free Software Foundation, Inc., 59 Temple Place,
+# Suite 330, Boston, MA 02111-1307, USA.
+#
+# In applying this license, CERN does not waive the privileges and immunities
+# granted to it by virtue of its status as an Intergovernmental Organization or
+# submit itself to any jurisdiction.
+
+"""Flask application configuration."""
+
+import pykube
+
+# FIXME do not share HTTPClient but only config
+PYKUBE_API = pykube.HTTPClient(pykube.KubeConfig.from_service_account())
+PYKUBE_API.session.verify = False

docs/conf.py

@@ -24,7 +24,12 @@
 from __future__ import print_function
 
 import os
-import sphinx.environment
+import sys
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+sys.path.insert(0, os.path.abspath('..'))
 
 # -- General configuration ------------------------------------------------
 
@@ -196,6 +201,3 @@
      author, 'reana', 'One line description of project.',
      'Miscellaneous'),
 ]
-
-# Mock autodoc imports:
-autodoc_mock_imports = ['k8s', ]

reana_job_controller/app.py

@@ -29,7 +29,7 @@
 
 from flask import Flask, abort, jsonify, request
 
-import k8s
+from reana_job_controller.k8s import instantiate_job, watch_jobs, watch_pods
 
 app = Flask(__name__)
 app.secret_key = "mega secret key"
@@ -179,13 +179,13 @@ def create_job():
 
     job_id = str(uuid.uuid4())
 
-    job_obj = k8s.create_job(job_id,
-                             request.json['docker-img'],
-                             cmd,
-                             cvmfs_repos,
-                             env_vars,
-                             request.json['experiment'],
-                             shared_file_system=True)
+    job_obj = instantiate_job(job_id,
+                              request.json['docker-img'],
+                              cmd,
+                              cvmfs_repos,
+                              env_vars,
+                              request.json['experiment'],
+                              shared_file_system=True)
 
     if job_obj:
         job = copy.deepcopy(request.json)
@@ -265,11 +265,15 @@ def get_job(job_id):
         level=logging.DEBUG,
         format='%(asctime)s - %(threadName)s - %(levelname)s: %(message)s'
     )
-    job_event_reader_thread = threading.Thread(target=k8s.watch_jobs,
-                                               args=(JOB_DB,))
+    app.config.from_object('config')
+
+    job_event_reader_thread = threading.Thread(target=watch_jobs,
+                                               args=(JOB_DB,
+                                                     app.config['PYKUBE_API']))
     job_event_reader_thread.start()
-    pod_event_reader_thread = threading.Thread(target=k8s.watch_pods,
-                                               args=(JOB_DB,))
+    pod_event_reader_thread = threading.Thread(target=watch_pods,
+                                               args=(JOB_DB,
+                                                     app.config['PYKUBE_API']))
     pod_event_reader_thread.start()
     app.run(debug=True, port=5000,
             host='0.0.0.0')

reana_job_controller/k8s.py

@@ -24,11 +24,11 @@
 
 import logging
 import time
+
 import pykube
-import volume_templates
+from flask import current_app as app
 
-api = pykube.HTTPClient(pykube.KubeConfig.from_service_account())
-api.session.verify = False
+import reana_job_controller.volume_templates
 
 
 def add_shared_volume(job, namespace):
@@ -46,8 +46,8 @@ def add_shared_volume(job, namespace):
     job['spec']['template']['spec']['volumes'].append(volume)
 
 
-def create_job(job_id, docker_img, cmd, cvmfs_repos, env_vars, namespace,
-               shared_file_system):
+def instantiate_job(job_id, docker_img, cmd, cvmfs_repos, env_vars, namespace,
+                    shared_file_system):
     """Create Kubernetes job.
 
     :param job_id: Job uuid.
@@ -119,21 +119,22 @@ def create_job(job_id, docker_img, cmd, cvmfs_repos, env_vars, namespace,
 
     # add better handling
     try:
-        job_obj = pykube.Job(api, job)
+        job_obj = pykube.Job(app.config['PYKUBE_API'], job)
         job_obj.create()
         return job_obj
     except pykube.exceptions.HTTPError:
         return None
 
 
-def watch_jobs(job_db):
+def watch_jobs(job_db, api_client):
     """Open stream connection to k8s apiserver to watch all jobs status.
 
     :param job_db: Dictionary which contains all current jobs.
     """
     while True:
         logging.debug('Starting a new stream request to watch Jobs')
-        stream = pykube.Job.objects(api).filter(namespace=pykube.all).watch()
+        stream = pykube.Job.objects(
+            api_client).filter(namespace=pykube.all).watch()
         for event in stream:
             logging.info('New Job event received')
             job = event.object
@@ -177,14 +178,15 @@ def watch_jobs(job_db):
                 job.delete()
 
 
-def watch_pods(job_db):
+def watch_pods(job_db, api_client):
     """Open stream connection to k8s apiserver to watch all pods status.
 
     :param job_db: Dictionary which contains all current jobs.
     """
     while True:
         logging.info('Starting a new stream request to watch Pods')
-        stream = pykube.Pod.objects(api).filter(namespace=pykube.all).watch()
+        stream = pykube.Pod.objects(
+            api_client).filter(namespace=pykube.all).watch()
         for event in stream:
             logging.info('New Pod event received')
             pod = event.object