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tests/data/nt/expected_results/df_test_nt_defense_finder_genes.tsv
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tests/data/nt/expected_results/df_test_nt_defense_finder_hmmer.tsv
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tests/data/nt/expected_results/df_test_nt_defense_finder_systems.tsv
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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| sys_id type subtype sys_beg sys_end protein_in_syst genes_count name_of_profiles_in_sys | ||
| KOAN001.0722.00001.C001_CAS_Class2-Subtype-II-C_26 CasFinder CAS_Class2-Subtype-II-C KOAN001.0722.00001.C001_2421 KOAN001.0722.00001.C001_2423 KOAN001.0722.00001.C001_2421,KOAN001.0722.00001.C001_2422,KOAN001.0722.00001.C001_2423 3 cas2_I_II_III_IV_V_VI_6,cas1_I_II_III_IV_V_VI_5,cas9_II-A_II-B_II-C_1 | ||
| KOAN001.0722.00001.C001_Septu_11 Septu Septu KOAN001.0722.00001.C001_254 KOAN001.0722.00001.C001_255 KOAN001.0722.00001.C001_254,KOAN001.0722.00001.C001_255 2 Septu__PtuB,Septu__PtuA | ||
| KOAN001.0722.00001.C001_Septu_12 Septu Septu KOAN001.0722.00001.C001_1167 KOAN001.0722.00001.C001_1168 KOAN001.0722.00001.C001_1167,KOAN001.0722.00001.C001_1168 2 Septu__PtuB,Septu__PtuA | ||
| KOAN001.0722.00001.C001_Wadjet_I_14 Wadjet Wadjet_I KOAN001.0722.00001.C001_1742 KOAN001.0722.00001.C001_1745 KOAN001.0722.00001.C001_1742,KOAN001.0722.00001.C001_1743,KOAN001.0722.00001.C001_1744,KOAN001.0722.00001.C001_1745 4 Wadjet__JetD_I,Wadjet__JetC_I,Wadjet__JetB_I,Wadjet__JetA_I | ||
| KOAN001.0722.00001.C001_RM_Type_II_23 RM RM_Type_II KOAN001.0722.00001.C001_22 KOAN001.0722.00001.C001_23 KOAN001.0722.00001.C001_22,KOAN001.0722.00001.C001_23 2 RM_Type_II__Type_II_MTases,RM_Type_II__Type_II_REases | ||
| KOAN001.0722.00001.C001_Septu_11 Septu Septu KOAN001.0722.00001.C001_254 KOAN001.0722.00001.C001_255 KOAN001.0722.00001.C001_254,KOAN001.0722.00001.C001_255 2 Septu__PtuA,Septu__PtuB | ||
| KOAN001.0722.00001.C001_RM_Type_I_21 RM RM_Type_I KOAN001.0722.00001.C001_677 KOAN001.0722.00001.C001_679 KOAN001.0722.00001.C001_677,KOAN001.0722.00001.C001_678,KOAN001.0722.00001.C001_679 3 RM__Type_I_MTases,RM__Type_I_REases,RM__Type_I_S | ||
| KOAN001.0722.00001.C001_AbiZ_5 AbiZ AbiZ KOAN001.0722.00001.C001_680 KOAN001.0722.00001.C001_680 KOAN001.0722.00001.C001_680 1 AbiZ__AbiZ | ||
| KOAN001.0722.00001.C001_RM_Type_IIG_25 RM RM_Type_IIG KOAN001.0722.00001.C001_1086 KOAN001.0722.00001.C001_1086 KOAN001.0722.00001.C001_1086 1 RM_Type_IIG__Type_IIG | ||
| KOAN001.0722.00001.C001_AbiL_4 AbiL AbiL KOAN001.0722.00001.C001_1160 KOAN001.0722.00001.C001_1161 KOAN001.0722.00001.C001_1160,KOAN001.0722.00001.C001_1161 2 AbiL__AbiLi2,AbiL__AbiLii | ||
| KOAN001.0722.00001.C001_Septu_12 Septu Septu KOAN001.0722.00001.C001_1167 KOAN001.0722.00001.C001_1168 KOAN001.0722.00001.C001_1167,KOAN001.0722.00001.C001_1168 2 Septu__PtuA,Septu__PtuB | ||
| KOAN001.0722.00001.C001_Gabija_6 Gabija Gabija KOAN001.0722.00001.C001_1740 KOAN001.0722.00001.C001_1741 KOAN001.0722.00001.C001_1740,KOAN001.0722.00001.C001_1741 2 Gabija__GajA,Gabija__GajB_1 | ||
| KOAN001.0722.00001.C001_Wadjet_I_14 Wadjet Wadjet_I KOAN001.0722.00001.C001_1742 KOAN001.0722.00001.C001_1745 KOAN001.0722.00001.C001_1742,KOAN001.0722.00001.C001_1743,KOAN001.0722.00001.C001_1744,KOAN001.0722.00001.C001_1745 4 Wadjet__JetA_I,Wadjet__JetB_I,Wadjet__JetC_I,Wadjet__JetD_I | ||
| KOAN001.0722.00001.C001_NLR_like_bNACHT01_9 NLR NLR_like_bNACHT01 KOAN001.0722.00001.C001_2014 KOAN001.0722.00001.C001_2014 KOAN001.0722.00001.C001_2014 1 NLR_like_bNACHT01__NLR_like_bNACHT01 | ||
| KOAN001.0722.00001.C001_NLR_like_bNACHT01_10 NLR NLR_like_bNACHT01 KOAN001.0722.00001.C001_3317 KOAN001.0722.00001.C001_3317 KOAN001.0722.00001.C001_3317 1 NLR_like_bNACHT01__NLR_like_bNACHT01 | ||
| KOAN001.0722.00001.C001_SpbK_15 SpbK SpbK KOAN001.0722.00001.C001_2040 KOAN001.0722.00001.C001_2040 KOAN001.0722.00001.C001_2040 1 SpbK__SpbK | ||
| KOAN001.0722.00001.C001_RM_Type_II_23 RM RM_Type_II KOAN001.0722.00001.C001_22 KOAN001.0722.00001.C001_23 KOAN001.0722.00001.C001_22,KOAN001.0722.00001.C001_23 2 RM_Type_II__Type_II_REases,RM_Type_II__Type_II_MTases | ||
| KOAN001.0722.00001.C001_RM_Type_I_21 RM RM_Type_I KOAN001.0722.00001.C001_677 KOAN001.0722.00001.C001_679 KOAN001.0722.00001.C001_677,KOAN001.0722.00001.C001_678,KOAN001.0722.00001.C001_679 3 RM__Type_I_S,RM__Type_I_MTases,RM__Type_I_REases | ||
| KOAN001.0722.00001.C001_RM_Type_IIG_25 RM RM_Type_IIG KOAN001.0722.00001.C001_1086 KOAN001.0722.00001.C001_1086 KOAN001.0722.00001.C001_1086 1 RM_Type_IIG__Type_IIG | ||
| KOAN001.0722.00001.C001_Dnd_ABCDE_16 Dnd Dnd_ABCDE KOAN001.0722.00001.C001_2084 KOAN001.0722.00001.C001_2091 KOAN001.0722.00001.C001_2084,KOAN001.0722.00001.C001_2086,KOAN001.0722.00001.C001_2087,KOAN001.0722.00001.C001_2089,KOAN001.0722.00001.C001_2090,KOAN001.0722.00001.C001_2091 6 Dnd__DndB,Dnd__DndC,Dnd__DndD,Dnd__DndD,Dnd__DndE,Dnd__DndE | ||
| KOAN001.0722.00001.C001_CAS_Class2-Subtype-II-C_26 Cas CAS_Class2-Subtype-II-C KOAN001.0722.00001.C001_2421 KOAN001.0722.00001.C001_2423 KOAN001.0722.00001.C001_2421,KOAN001.0722.00001.C001_2422,KOAN001.0722.00001.C001_2423 3 cas1_I_II_III_IV_V_VI_5,cas2_I_II_III_IV_V_VI_6,cas9_II-A_II-B_II-C_1 | ||
| KOAN001.0722.00001.C001_SoFic_20 SoFIC SoFic KOAN001.0722.00001.C001_2823 KOAN001.0722.00001.C001_2823 KOAN001.0722.00001.C001_2823 1 SoFic__SoFic | ||
| KOAN001.0722.00001.C001_AbiE_2 AbiE AbiE KOAN001.0722.00001.C001_2843 KOAN001.0722.00001.C001_2844 KOAN001.0722.00001.C001_2843,KOAN001.0722.00001.C001_2844 2 AbiEii__AbiEi_4,AbiEii__AbiEii | ||
| KOAN001.0722.00001.C001_AbiE_2 AbiE AbiE KOAN001.0722.00001.C001_2843 KOAN001.0722.00001.C001_2844 KOAN001.0722.00001.C001_2843,KOAN001.0722.00001.C001_2844 2 AbiEii__AbiEi_4,AbiEii__AbiEii | ||
| KOAN001.0722.00001.C001_SanaTA_19 SanaTA SanaTA KOAN001.0722.00001.C001_2843 KOAN001.0722.00001.C001_2844 KOAN001.0722.00001.C001_2843,KOAN001.0722.00001.C001_2844 2 SanaTA__SanaA,SanaTA__SanaT | ||
| KOAN001.0722.00001.C001_SanaTA_19 SanaTA SanaTA KOAN001.0722.00001.C001_2843 KOAN001.0722.00001.C001_2844 KOAN001.0722.00001.C001_2843,KOAN001.0722.00001.C001_2844 2 SanaTA__SanaA,SanaTA__SanaT | ||
| KOAN001.0722.00001.C001_RM_Type_II_24 RM RM_Type_II KOAN001.0722.00001.C001_2943 KOAN001.0722.00001.C001_2944 KOAN001.0722.00001.C001_2943,KOAN001.0722.00001.C001_2944 2 RM_Type_II__Type_II_MTases,RM_Type_II__Type_II_REases | ||
| KOAN001.0722.00001.C001_RM_Type_I_22 RM RM_Type_I KOAN001.0722.00001.C001_4033 KOAN001.0722.00001.C001_4038 KOAN001.0722.00001.C001_4033,KOAN001.0722.00001.C001_4036,KOAN001.0722.00001.C001_4038 3 RM__Type_I_REases,RM__Type_I_S,RM__Type_I_MTases | ||
| KOAN001.0722.00001.C001_Dnd_ABCDE_16 Dnd Dnd_ABCDE KOAN001.0722.00001.C001_2084 KOAN001.0722.00001.C001_2091 KOAN001.0722.00001.C001_2084,KOAN001.0722.00001.C001_2086,KOAN001.0722.00001.C001_2087,KOAN001.0722.00001.C001_2089,KOAN001.0722.00001.C001_2090,KOAN001.0722.00001.C001_2091 6 Dnd__DndB,Dnd__DndE,Dnd__DndD,Dnd__DndE,Dnd__DndD,Dnd__DndC | ||
| KOAN001.0722.00001.C001_AbiZ_5 AbiZ AbiZ KOAN001.0722.00001.C001_680 KOAN001.0722.00001.C001_680 KOAN001.0722.00001.C001_680 1 AbiZ__AbiZ | ||
| KOAN001.0722.00001.C001_AbiL_4 AbiL AbiL KOAN001.0722.00001.C001_1160 KOAN001.0722.00001.C001_1161 KOAN001.0722.00001.C001_1160,KOAN001.0722.00001.C001_1161 2 AbiL__AbiLii,AbiL__AbiLi2 | ||
| KOAN001.0722.00001.C001_Gabija_6 Gabija Gabija KOAN001.0722.00001.C001_1740 KOAN001.0722.00001.C001_1741 KOAN001.0722.00001.C001_1740,KOAN001.0722.00001.C001_1741 2 Gabija__GajA,Gabija__GajB_1 | ||
| KOAN001.0722.00001.C001_AbiE_2 AbiE AbiE KOAN001.0722.00001.C001_2843 KOAN001.0722.00001.C001_2844 KOAN001.0722.00001.C001_2843,KOAN001.0722.00001.C001_2844 2 AbiEii__AbiEii,AbiEii__AbiEi_4 | ||
| KOAN001.0722.00001.C001_AbiD_1 AbiD AbiD KOAN001.0722.00001.C001_3068 KOAN001.0722.00001.C001_3068 KOAN001.0722.00001.C001_3068 1 AbiD__AbiD | ||
| KOAN001.0722.00001.C001_Retron_VI_18 Retron Retron_VI KOAN001.0722.00001.C001_3146 KOAN001.0722.00001.C001_3147 KOAN001.0722.00001.C001_3146,KOAN001.0722.00001.C001_3147 2 Retron_VI__HTH,Retron__RT_Tot | ||
| KOAN001.0722.00001.C001_AbiH_3 AbiH AbiH KOAN001.0722.00001.C001_3309 KOAN001.0722.00001.C001_3309 KOAN001.0722.00001.C001_3309 1 AbiH__AbiH | ||
| KOAN001.0722.00001.C001_NLR_like_bNACHT01_10 NLR NLR_like_bNACHT01 KOAN001.0722.00001.C001_3317 KOAN001.0722.00001.C001_3317 KOAN001.0722.00001.C001_3317 1 NLR_like_bNACHT01__NLR_like_bNACHT01 | ||
| KOAN001.0722.00001.C001_RM_Type_I_22 RM RM_Type_I KOAN001.0722.00001.C001_4033 KOAN001.0722.00001.C001_4038 KOAN001.0722.00001.C001_4033,KOAN001.0722.00001.C001_4036,KOAN001.0722.00001.C001_4038 3 RM__Type_I_MTases,RM__Type_I_REases,RM__Type_I_S | ||
| KOAN001.0722.00001.C001_Pycsar_17 Pycsar Pycsar KOAN001.0722.00001.C001_4034 KOAN001.0722.00001.C001_4035 KOAN001.0722.00001.C001_4034,KOAN001.0722.00001.C001_4035 2 CBASS__2TM_5,Pycsar__AG_cyclase | ||
| KOAN001.0722.00001.C001_Viperin_8 Viperin Viperin KOAN001.0722.00001.C001_4280 KOAN001.0722.00001.C001_4280 KOAN001.0722.00001.C001_4280 1 Viperin__pVip | ||
| KOAN001.0722.00001.C001_RloC_7 RloC RloC KOAN001.0722.00001.C001_4361 KOAN001.0722.00001.C001_4361 KOAN001.0722.00001.C001_4361 1 RloC__RloC | ||
| KOAN001.0722.00001.C001_SoFic_20 SoFIC SoFic KOAN001.0722.00001.C001_2823 KOAN001.0722.00001.C001_2823 KOAN001.0722.00001.C001_2823 1 SoFic__SoFic | ||
| KOAN001.0722.00001.C001_SanaTA_19 SanaTA SanaTA KOAN001.0722.00001.C001_2843 KOAN001.0722.00001.C001_2844 KOAN001.0722.00001.C001_2843,KOAN001.0722.00001.C001_2844 2 SanaTA__SanaT,SanaTA__SanaA | ||
| KOAN001.0722.00001.C001_Retron_VI_18 Retron Retron_VI KOAN001.0722.00001.C001_3146 KOAN001.0722.00001.C001_3147 KOAN001.0722.00001.C001_3146,KOAN001.0722.00001.C001_3147 2 Retron_VI__HTH,Retron__RT_Tot | ||
| KOAN001.0722.00001.C001_Pycsar_17 Pycsar Pycsar KOAN001.0722.00001.C001_4034 KOAN001.0722.00001.C001_4035 KOAN001.0722.00001.C001_4034,KOAN001.0722.00001.C001_4035 2 CBASS__2TM_5,Pycsar__AG_cyclase |
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