fix requirements from sources #31
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| name: tests | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: awalsh128/cache-apt-pkgs-action@latest | |
| with: | |
| packages: hmmer | |
| version: 1.0 | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('requirements.txt') }}-${{ hashFiles('requirements-dev.txt') }} | |
| - run: pip install .[dev] | |
| - name: Update DefenseFinder models | |
| run: | | |
| defense-finder update | |
| - name: Run the tests | |
| run: | | |
| export PYTHONPATH="$(pwd)" | |
| coverage run --source . tests/run_test.py | |
| coverage report -m |