fix issue #48 #28
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: tests | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: awalsh128/cache-apt-pkgs-action@latest | |
| with: | |
| packages: hmmer | |
| version: 1.0 | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('requirements.txt') }} | |
| - run: pip install coverage -r requirements.txt | |
| - name: Install dependencies | |
| run: | | |
| pip install .[dev] | |
| - name: Install dependencies | |
| run: | | |
| pip install "git+https://github.com/gem-pasteur/macsyfinder.git" | |
| - name: Update DefenseFinder models | |
| run: | | |
| defense-finder update | |
| - name: Run the tests | |
| run: | | |
| export PYTHONPATH="$(pwd)" | |
| coverage run --source . tests/run_test.py | |
| coverage report -m |