add coverage #7
Workflow file for this run
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| name: tests | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: awalsh128/cache-apt-pkgs-action@latest | |
| with: | |
| packages: hmmer | |
| version: 1.0 | |
| - run: pip install -r requirements.txt | |
| - run: pip install coverage | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install .[dev] | |
| - name: Update DefenseFinder models | |
| run: | | |
| defense-finder update | |
| - name: Run the tests | |
| run: | | |
| coverage run --source . tests/run_tests.py | |
| coverage report -m |