tests

add hmmer #2

	name: tests

	on: [push]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.9"]

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	apt-get install hmmer
	python -m pip install --upgrade pip
	pip install -r requirements.txt
	pip install coverage
	pip install -e .
	- name: Update DefenseFinder models
	run: \|
	defense-finder update
	- name: Run the tests
	run: \|
	coverage run --source . tests/run_tests.py
	coverage report -m

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