caballero is testing #42
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| name: Rintro2HTML | |
| run-name: ${{ github.actor }} is testing | |
| on: | |
| push: | |
| branches: ["2024.04"] | |
| jobs: | |
| build: | |
| name: Conda Tests | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| container: node:latest | |
| steps: | |
| - name: Print shell information | |
| run: | | |
| echo "Shell: $SHELL" | |
| echo "Shell version: $($SHELL --version)" | |
| uname -a || true | |
| - uses: actions/checkout@v4 | |
| - name: Check yaml | |
| run: | | |
| cat configs/conda.yml || true | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: configs/conda.yml | |
| - name: List Available Environment | |
| shell: bash -l {0} | |
| run: micromamba list | |
| - name: Activate Environment | |
| run: micromamba activate Rintro | |
| - name: Check Installation | |
| run: | | |
| echo "after conda activate Rintro: PATH=$PATH;" | |
| which R || true | |
| R --version || true | |
| - name: Installation non-conda packages | |
| run: | | |
| Rscript -e 'install.packages(c("KernSmooth"), repos="https://cloud.r-project.org")' | |
| - name: Inspect .libPaths | |
| run: | | |
| Rscript -e '.libPaths()' | |
| #- name: Render quarto | |
| # continue-on-error: true # only for error tracking | |
| #run: | | |
| #quarto render | |
| #- name: Show all files in docs | |
| #run: ls -Ral docs | |
| #- name: Show file contents | |
| #run: | | |
| #cat docs/index.html | |
| #- name: Upload | |
| #uses: actions/upload-pages-artifact@v3 | |
| #with: | |
| #path: ./docs | |
| #- name: Deploy to GitHub Pages | |
| #uses: peaceiris/actions-gh-pages@v3 | |
| #if: ${{ !env.ACT }} | |
| #with: | |
| #github_token: ${{ secrets.GITHUB_TOKEN }} | |
| #publish_dir: | | |
| #./docs | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Render and Publish | |
| uses: quarto-dev/quarto-actions/publish@v2 | |
| with: | |
| target: gh-pages | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |