thomasmanke is testing #40

	name: Rintro2HTML
	run-name: ${{ github.actor }} is testing

	on:
	push:
	branches: ["2024.04"]


	jobs:

	build:
	name: Conda Tests
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	container: node:latest

	steps:
	- name: Print shell information
	run: \|
	echo "Shell: $SHELL"
	echo "Shell version: $($SHELL --version)"
	uname -a \|\| true

	- uses: actions/checkout@v4
	- name: Check yaml
	run: \|
	cat configs/conda.yml \|\| true

	- name: Install Conda environment with Micromamba
	uses: mamba-org/setup-micromamba@main
	with:
	environment-file: configs/conda.yml

	- name: List Available Environment
	shell: bash -l {0}
	run: micromamba list

	- name: Activate Environment
	run: micromamba activate Rintro

	- name: Check Installation
	run: \|
	echo "after conda activate Rintro: PATH=$PATH;"
	which R \|\| true
	R --version \|\| true

	- name: Installation non-conda packages
	run: \|
	Rscript -e 'install.packages(c("KernSmooth"), repos="https://cloud.r-project.org")'

	- name: Inspect .libPaths
	run: \|
	Rscript -e '.libPaths()'

	- name: Render quarto
	# continue-on-error: true # only for error tracking
	run: \|
	quarto render

	- name: Show all files in docs
	run: ls -Ral docs

	- name: Show file contents
	run: \|
	cat docs/index.html

	- name: Upload
	uses: actions/upload-pages-artifact@v3
	with:
	path: ./docs

	- name: Deploy to GitHub Pages
	uses: peaceiris/actions-gh-pages@v3
	if: ${{ !env.ACT }}
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: \|
	./docs

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