thomasmanke is testing #34
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| name: Rintro2HTML | |
| run-name: ${{ github.actor }} is testing | |
| on: | |
| push: | |
| branches: ["2024.04"] | |
| jobs: | |
| build: | |
| name: Conda Tests | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| container: node:latest | |
| steps: | |
| - name: Print shell information | |
| run: | | |
| echo "Shell: $SHELL" | |
| echo "Shell version: $($SHELL --version)" | |
| uname -a || true | |
| - uses: actions/checkout@v2 | |
| - name: Check yaml | |
| run: | | |
| cat configs/conda.yml || true | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: configs/conda.yml | |
| - name: List Available Environment | |
| shell: bash -l {0} | |
| run: micromamba list | |
| - name: Activate Environment | |
| run: micromamba activate Rintro | |
| - name: Check Installation | |
| run: | | |
| echo "after conda activate Rintro: PATH=$PATH;" | |
| which R || true | |
| R --version || true | |
| - name: Installation non-conda packages | |
| run: | | |
| Rscript -e 'install.packages(c("dslabs","KernSmooth"), repos="https://cloud.r-project.org")' | |
| - name: Inspect dslabs ext_data | |
| run: | | |
| Rscript -e '.libPaths()' | |
| Rscript -e 'find.package("dslabs")' | |
| Rscript -e 'list.files(system.file(package="dslabs"))' | |
| Rscript -e 'list.files(system.file("extdata", package="dslabs"))' | |
| - name: Render quarto | |
| continue-on-error: true # only for error tracking | |
| run: | | |
| ls -Rl /github/home/micromamba/envs/Rintro/lib/R/library/dslabs | |
| quarto render qmd | |
| - name: Show all files | |
| run: ls -Ral | |
| - name: Upload | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: ./docs | |
| - name: Deploy to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: ${{ !env.ACT }} | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: | | |
| ./docs | |
| # deploy: | |
| # needs: build | |
| # environment: | |
| # name: github-pages | |
| # url: ${{ steps.deployment.outputs.page_url }} | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Deploy to GitHub Pages | |
| # id: deployment | |
| # uses: actions/deploy-pages@v4 |