add a new line #30
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: run tests | |
| on: | |
| pull_request: | |
| push: | |
| schedule: | |
| - cron: 0 2 * * * # run at 2 AM UTC | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| name: "Test Python ${{ matrix.python-version }} with MPI (${{ matrix.enable-mpi }})" | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.7, '3.10'] | |
| enable-mpi: [false, true] | |
| steps: | |
| - name: Define common environment variables | |
| run: | | |
| echo "CPPFLAGS=-I${HOME}/local/include" >> $GITHUB_ENV | |
| echo "LDFLAGS=-L${HOME}/local/lib" >> $GITHUB_ENV | |
| echo "HDF5_BASE_CPPFLAGS=-I/usr/include/hdf5" >> $GITHUB_ENV | |
| echo "HDF5_BASE_LDFLAGS=-L/usr/lib/x86_64-linux-gnu/hdf5" >> $GITHUB_ENV | |
| echo "GEN_CTL_IO=${HOME}/local/bin/gen-ctl-io" >> $GITHUB_ENV | |
| - run: | | |
| echo "HDF5_SERIAL_CPPFLAGS=${HDF5_BASE_CPPFLAGS}/serial" >> $GITHUB_ENV | |
| echo "HDF5_PARALLEL_CPPFLAGS=${HDF5_BASE_CPPFLAGS}/openmpi" >> $GITHUB_ENV | |
| echo "HDF5_SERIAL_LDFLAGS=${HDF5_BASE_LDFLAGS}/serial" >> $GITHUB_ENV | |
| echo "HDF5_PARALLEL_LDFLAGS=${HDF5_BASE_LDFLAGS}/openmpi" >> $GITHUB_ENV | |
| - name: Install pre-compiled dependencies | |
| run: | | |
| sudo apt-get -y update | |
| sudo apt-get -y install autoconf automake libfftw3-dev libgsl-dev liblapack-dev guile-3.0-dev libpng-dev libtool swig | |
| - name: Checkout libctl repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: NanoComp/libctl | |
| path: libctl-src | |
| - name: Build and install libctl | |
| run: cd libctl-src && sh autogen.sh --prefix=${HOME}/local --enable-shared && make -j $(nproc) && make install | |
| - name: Checkout harminv repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: NanoComp/harminv | |
| path: harminv-src | |
| - name: Build and install harminv | |
| run: cd harminv-src && sh autogen.sh --prefix=${HOME}/local --enable-shared && make -j $(nproc) && make install | |
| - name: Checkout MPB repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: NanoComp/mpb | |
| path: mpb-src | |
| - name: Build and install MPB | |
| run: cd mpb-src && sh autogen.sh --prefix=${HOME}/local --enable-shared LIBS=-ldl --with-libctl=${HOME}/local/share/libctl --with-hermitian-eps && make -j $(nproc) && make install | |
| - name: Checkout libGDSII repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: HomerReid/libGDSII | |
| path: libGDSII-src | |
| - name: Build and install libGDSII | |
| run: cd libGDSII-src && sh autogen.sh --prefix=${HOME}/local && make install | |
| - name: Define environment variables for serial build | |
| if: ${{ matrix.enable-mpi == false }} | |
| run: | | |
| echo "MKCHECKFLAGS=-j $(nproc)" >> $GITHUB_ENV | |
| echo "CPPFLAGS=${HDF5_SERIAL_CPPFLAGS} ${CPPFLAGS}" >> $GITHUB_ENV | |
| echo "LDFLAGS=${HDF5_SERIAL_LDFLAGS} ${LDFLAGS}" >> $GITHUB_ENV | |
| echo "MPICONF=--without-mpi" >> $GITHUB_ENV | |
| - name: Define environment variables for MPI build | |
| if: matrix.enable-mpi | |
| run: | | |
| echo "MKCHECKFLAGS=" >> $GITHUB_ENV | |
| echo "CPPFLAGS=${HDF5_PARALLEL_CPPFLAGS} ${CPPFLAGS}" >> $GITHUB_ENV | |
| echo "LDFLAGS=${HDF5_PARALLEL_LDFLAGS} ${LDFLAGS}" >> $GITHUB_ENV | |
| echo "CC=mpicc" >> $GITHUB_ENV | |
| echo "CXX=mpic++" >> $GITHUB_ENV | |
| echo "HDF5_MPI=ON" >> $GITHUB_ENV | |
| echo "MPICONF=--with-mpi" >> $GITHUB_ENV | |
| - name: Install serial dependencies | |
| if: ${{ matrix.enable-mpi == false }} | |
| run: sudo apt-get -y install libhdf5-serial-dev | |
| - name: Install MPI dependencies | |
| if: matrix.enable-mpi | |
| run: sudo apt-get -y install libopenmpi-dev mpi-default-bin openmpi-bin libhdf5-openmpi-dev libaec-dev | |
| - name: Checkout Meep repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python (version ${{ matrix.python-version }}) | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Get pip cache dir | |
| id: pip-cache | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT | |
| - name: pip cache | |
| uses: actions/cache@v3 | |
| id: cache | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ runner.os }}-py${{ matrix.python-version }}-mpi-${{ matrix.enable-mpi }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: ${{ runner.os }}-py${{ matrix.python-version }}-mpi-${{ matrix.enable-mpi }}-pip- | |
| - name: Install Python dependencies | |
| run: pip install -r python/requirements.txt | |
| - name: Install nlopt | |
| run: pip install nlopt | |
| - name: Install coverage | |
| if: ${{ matrix.enable-mpi == false && matrix.python-version == 3.7 }} | |
| run: pip install coverage | |
| - name: Install mpi4py | |
| if: ${{ matrix.enable-mpi && steps.cache.outputs.cache-hit != true }} | |
| run: pip install mpi4py | |
| - name: Run autoreconf | |
| run: | | |
| autoreconf --verbose --install --symlink --force | |
| MEEP_VERSION=$(./configure -V | grep meep | awk '{print $3}') | |
| echo "MEEP_VERSION=${MEEP_VERSION}" >> $GITHUB_ENV | |
| - name: Run configure with OpenMP | |
| if: ${{ !(matrix.enable-mpi == false && matrix.python-version == 3.7) && !(matrix.enable-mpi == true && matrix.python-version == 3.10) }} | |
| run: | | |
| mkdir -p build && | |
| pushd build && | |
| ../configure --enable-maintainer-mode --prefix=${HOME}/local --with-libctl=${HOME}/local/share/libctl ${MPICONF} --with-openmp && | |
| popd | |
| - name: Run configure with coverage | |
| if: ${{ matrix.enable-mpi == false && matrix.python-version == 3.7 }} | |
| run: ./configure --enable-maintainer-mode --with-coverage --prefix=${HOME}/local --with-libctl=${HOME}/local/share/libctl ${MPICONF} | |
| - name: Run configure with single-precision floating point and swig threads | |
| if: ${{ matrix.enable-mpi == true && matrix.python-version == 3.10 }} | |
| run: | | |
| mkdir -p build && | |
| pushd build && | |
| ../configure --enable-maintainer-mode --prefix=${HOME}/local --with-libctl=${HOME}/local/share/libctl ${MPICONF} --enable-single --enable-swig-python-threads && | |
| popd | |
| - name: Run make | |
| if: ${{ matrix.enable-mpi == false && matrix.python-version == 3.7 }} | |
| run: make ${MKCHECKFLAGS} | |
| - name: Run make check | |
| if: ${{ matrix.enable-mpi == false && matrix.python-version == 3.7 }} | |
| run: | | |
| pushd python/ && | |
| { make ${MKCHECKFLAGS} check || cat test-suite.log; } && | |
| popd | |
| - name: Run make distcheck | |
| if: ${{ !(matrix.enable-mpi == false && matrix.python-version == 3.7) }} | |
| run: | | |
| pushd build && | |
| make ${MKCHECKFLAGS} distcheck DISTCHECK_CONFIGURE_FLAGS="--with-libctl=${HOME}/local/share/libctl ${MPICONF}" && | |
| popd | |
| - name: Generate coverage report | |
| if: ${{ matrix.enable-mpi == false && matrix.python-version == 3.7 }} | |
| run: | | |
| pushd python/ && | |
| coverage combine -a && | |
| coverage report -i && | |
| coverage xml -i && | |
| popd | |
| - name: Upload coverage to Codecov | |
| if: ${{ matrix.enable-mpi == false && matrix.python-version == 3.7 }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ${{ github.workspace }}/python/coverage.xml | |
| - name: Archive C++ test logs | |
| if: ${{ failure() && !(matrix.enable-mpi == false && matrix.python-version == 3.7) }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: cpp-tests-mpi-${{ matrix.enable-mpi }}-log | |
| path: ${{ github.workspace }}/build/meep-${{ env.MEEP_VERSION }}/_build/sub/tests/test-suite.log | |
| - name: Archive Python test logs | |
| if: ${{ failure() && !(matrix.enable-mpi == false && matrix.python-version == 3.7) }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: py${{ matrix.python-version }}-tests-mpi-${{ matrix.enable-mpi }}-log | |
| path: ${{ github.workspace }}/build/meep-${{ env.MEEP_VERSION }}/_build/sub/python/test-suite.log |