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1. remove_orphan_reads remove_orphan_reads Public

   A script to take two fastq files and split them by reads that are paired and those that are unpaired

   Python 1

2. hodgkinia_model hodgkinia_model Public

   A model for hodgkinia and symbionts

   Jupyter Notebook

3. egg_simulation egg_simulation Public

   A simulation of Hodgkinia transmission in cicadas

   Python

4. assembly_stats assembly_stats Public

   A simple script to calculate some basic assembly statistics

   Python

5. blast_parsing blast_parsing Public

   A couple scripts to parse BLAST output and retrieve the target sequences

   Python

6. create_pcr_primers create_pcr_primers Public

   A script to make PCR primers going off the end of a contig (i.e. to circularize it)

   Python