Various modelling projects
Main Languages: Python
Additional: MATLAB and Mathematica
Contents:
- modelling cell state dynamics with boolean networks (hopfield-like neural networks)
- bacterial conjugation and population growth (ODEs and PDEs)
- bacterial interaction on a grid (agent-based models)
- effect of antimicrobial peptides on bacterial membranes (thermodynamics / mean-field stat mech)
- immune cell signal processing project (stat mech / ODEs)