Aggregation pipelines in resource classes

[munrojm]

Convert all calls to query method in Resource classes to aggregation pipelines. This is to ensure determinacy in return results when different skip and limit values are used for the same set of criteria.

[codecov]

Codecov Report

Base: 88.42% // Head: 88.45% // Increases project coverage by +0.02% 🎉

Coverage data is based on head (401b510) compared to base (4731ada).
Patch coverage: 88.46% of modified lines in pull request are covered.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #759      +/-   ##
==========================================
+ Coverage   88.42%   88.45%   +0.02%     
==========================================
  Files          41       41              
  Lines        3135     3169      +34     
==========================================
+ Hits         2772     2803      +31     
- Misses        363      366       +3     

Impacted Files	Coverage Δ
src/maggma/api/resource/submission.py	82.44% <78.94%> (+0.08%)	⬆️
src/maggma/api/resource/post_resource.py	91.04% <93.33%> (+0.13%)	⬆️
src/maggma/api/resource/read_resource.py	88.49% <94.44%> (+1.11%)	⬆️

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