v0.2.0

MicrobeAgents v0.2.0

Diff since v0.1.0

Merged pull requests:

• Update docs (#48) (@mastrof)
• Use and reexport Agents.jl API functions to access model properties (#52) (@mastrof)
• Update to Agents v6 (#53) (@mastrof)
• Simple stepping benchmarks (#58) (@mastrof)
• Remove leftover tuple conversions (#59) (@mastrof)
• Deprecate UnremovableABM (#60) (@mastrof)
• Use new Agents API function abmtime instead of manual time counter (#61) (@mastrof)
• Simplify motility types (#62) (@mastrof)
• Remove ChainedFunction (#63) (@mastrof)
• Update docs and use Literate.jl (#64) (@mastrof)
• Analysis submodule (#65) (@mastrof)
• Add example: drift in exponential ramp with brumley model (#66) (@mastrof)
• update tests on postprocessing, acf, msd; comment out turn detection … (#67) (@mastrof)
• replace deprecated add_agent_pos! with add_agent_own_pos! (#68) (@mastrof)
• use affect! as ABM property (#69) (@mastrof)
• use abmrng in chemotaxis models (#71) (@mastrof)
• Internally convert ABM propetries to NamedTuple and define chemoattractant as a struct (#72) (@mastrof)
• Use explicit formula for 2D rotations, quaternions for 3D rotations (#73) (@mastrof)
• Export chemoattractant api function (#74) (@mastrof)
• update docstrings and api page of the docs (#75) (@mastrof)
• Agents v6 (#76) (@mastrof)

Closed issues:

• affect! should be passed as argument, not through overloading (#15)
• Example: drift velocity (#16)
• Motion along spherical surfaces (#30)
• Define a velocity function (#34)
• Change symbol for ChainedFunction (#36)
• Support AbstractGridSpace (#39)
• Move analysis routines to submodule? (#42)
• Drop acf in favor of autocor from StatsBase.jl? (#44)
• Rework microbe type definitions using @agent macro (#50)
• Add type parameter for motility (#56)
• Benchmarks (#57)
• Use ABM's random number generator in chemotaxis models (#70)