Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Agents v6 #76

Merged
merged 3 commits into from
Mar 10, 2024
Merged

Agents v6 #76

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
ee40d3e
update project
mastrof Mar 10, 2024
b3a7d33
update readme
mastrof Mar 10, 2024
2d61a89
changelog unnecessary for now
mastrof Mar 10, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
9 changes: 0 additions & 9 deletions CHANGELOG.md
View file
Open in desktop

This file was deleted.

5 changes: 4 additions & 1 deletion Project.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,16 +12,19 @@ Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
MeanSquaredDisplacement = "13c93d70-909c-440c-af92-39d48ffa2ba2"
OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
Quaternions = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0"
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"

[compat]
Agents = "6"
Autocorrelations = "0.1"
CellListMap = "0.8"
DataFrames = "1"
Distributions = "0.25"
GeometryBasics = "0.4"
MeanSquaredDisplacement = "0.2"
Quaternions = "0.7"
StaticArrays = "1"
julia = "1"

Expand Down
11 changes: 0 additions & 11 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,17 +14,6 @@ recommended to use it alongside Agents.jl for extra niceties.
The package is still at an early stage of intense development.
Contributions, requests and suggestions are more than welcome.

**To use the latest development version of MicrobeAgents it's required to manually install
the latest version of Agents first (`]add Agents#main`).**

**Documentation deployment is currently broken due to dependency on unreleased Agents.jl version; you can build it locally with the following code (requires the LiveServer.jl package):**
```
git clone https://github.com/mastrof/MicrobeAgents.jl.git
cd MicrobeAgents.jl
julia --project=docs/ -e 'import Pkg; Pkg.instantiate(); Pkg.add(name="Agents", rev="main"); include("docs/make.jl")'
julia -e 'using LiveServer; serve(dir="docs/build")'
```

## Main features
- Multiple swimming strategies (run-tumble, run-reverse, run-reverse-flick) with tunable parameters, and possibility to implement your own with minimal effort
- Classical and modern models of chemotaxis (Berg-Purcell, Celani-Vergassola, Xie, Brumley)
Expand Down
Loading