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marlinfiggins/README.md

Hi there 👋

I'm a (data) scientist, mathematician, and researcher interested in developing methods and models for understanding infectious disease transmission and pathogen evolution. Currently, I'm a PhD candidate at the University of Washington in Applied Mathematics in Trevor Bedford's group at Fred Hutch (@blab)

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  1. blab/evofr blab/evofr Public

    Tools for evolutionary forecasting

    Jupyter Notebook 5 1

  2. nextstrain/forecasts-ncov nextstrain/forecasts-ncov Public

    SARS-CoV-2 variant growth rates and frequency forecasts

    Python 7 2

  3. blab/ncov-forecasting-fit blab/ncov-forecasting-fit Public

    Assessing accuracy of fitness model forecasts

    Jupyter Notebook 1 2

  4. blab/relative-fitness-mechanisms blab/relative-fitness-mechanisms Public

    Frequency dynamics predict viral fitness, antigenic relationships and epidemic growth

    Jupyter Notebook 1

  5. blab/rt-from-frequency-dynamics blab/rt-from-frequency-dynamics Public

    Inferring variant-specific effective reproduction numbers from combined case and sequencing data

    Mathematica 46 4

  6. pybayes_ts pybayes_ts Public

    Bayesian hierarchical time series models

    Python 2