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Larger file storage #35

Merged
merged 13 commits into from
Mar 27, 2017
Merged

Larger file storage #35

merged 13 commits into from
Mar 27, 2017

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jhprinz
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@jhprinz jhprinz commented Mar 23, 2017

resolves #26.

Add the possibility to store arbitrary large objects. So far this is only used by PyEMMAModel to save the returned results. This is handled by gridFS and it automatically divides large files into blocks.

I also store the result model.json in a folder in projects/proj-name/models for later processing.

@jhprinz jhprinz changed the title [WIP] Larger file storage Larger file storage Mar 23, 2017
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jhprinz commented Mar 23, 2017

Done.

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jhprinz commented Mar 23, 2017

If @thempel has more problems with file sizes we can use the same for storing file contents in general...

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thempel commented Mar 23, 2017

In general: Yes, it would be good to not be limited in the system size. The system I am working with right now is not very big (25,000 atoms) and the files that need to be moved around are about 11.5 MB, so already pretty close to the 16 MB. In the case mentioned in #28, I suspect another problem since it used to work before.

@jhprinz jhprinz mentioned this pull request Mar 23, 2017
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jhprinz commented Mar 23, 2017

Done. This is implemented. This means (when it works) we have now all major features we talked about. The featurizer stuff would be icing on the cake. Who would have thought. I approach the pure 6000 lines of code... (not considering all that I added and deleted) :)

@jhprinz jhprinz mentioned this pull request Mar 23, 2017
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jhprinz commented Mar 27, 2017

merging

@jhprinz jhprinz merged commit a1f2255 into markovmodel:master Mar 27, 2017
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mongodb file size limitations
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