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59 Open 261 Closed
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Issues list

Redefinition of gplt_params.figure enhancement New feature or request
#644 opened Oct 19, 2024 by jonbrenas
Re-order API client releases
#642 opened Oct 16, 2024 by ahernank
Add sample_query_options arg to functions without sample_query arg, e.g. h1x_gwss enhancement New feature or request usability
#635 opened Oct 7, 2024 by leehart
@leehart
1
Better defaults for chunks parameters performance
#629 opened Sep 26, 2024 by alimanfoo
Various code warnings raised - umbrella issue maintenance usability
#609 opened Sep 19, 2024 by leehart
2 of 4 tasks
2024Q3
@leehart @jonbrenas
Out of core PCA scalability Issues preventing running functions on larger datasets.
#607 opened Sep 17, 2024 by alimanfoo
1
Allow multiple snp_transcripts in plot_diplotype_clustering_advanced() enhancement New feature or request
#600 opened Sep 13, 2024 by sanjaynagi
@sanjaynagi
Warning while running tests/anoph/test_fst.py for af1: RuntimeWarning: invalid value encountered in divide maintenance
#598 opened Sep 10, 2024 by jonbrenas
@jonbrenas
2
Multiple H12 traces enhancement New feature or request
#594 opened Sep 5, 2024 by jonbrenas
1
@jonbrenas
Colors in GWSS plots enhancement New feature or request
#583 opened Aug 16, 2024 by jonbrenas
@jonbrenas
4
More plotting options in plot_* functions enhancement New feature or request
#582 opened Aug 16, 2024 by jonbrenas
Cannot always select older versions from docs switcher bug Something isn't working documentation Improvements or additions to documentation
#578 opened Aug 5, 2024 by leehart
FAILED tests/anoph/test_g123.py::test_g123_calibration[af1_sim] - IndexError: index -1 is out of bounds for axis 0 with size 0 help wanted Extra attention is needed maintenance
#571 opened Jul 26, 2024 by alimanfoo
1
SNP browser to replace Panoptes enhancement New feature or request
#563 opened Jul 3, 2024 by EricRLucas
@leehart
9
Display normal copy number (2) differently from missing CNV call (NaN) in advanced diplotype clustering enhancement New feature or request usability
#559 opened Jun 27, 2024 by alimanfoo 2024Q3
3
Advanced diplotype clustering orders genes in the CNV section by label rather than by genomic position enhancement New feature or request usability
#558 opened Jun 27, 2024 by alimanfoo 2024Q3
6
codecov/project CI check fails but seems to require additional coverage on code unrelated to the PR maintenance
#554 opened Jun 20, 2024 by leehart
Consider adding more documentation for sample set metadata documentation Improvements or additions to documentation
#553 opened Jun 20, 2024 by leehart
Upgrade latest_docs.yml to use Node.js 20 maintenance
#552 opened Jun 17, 2024 by leehart
@leehart
explanation of site_annotations output documentation Improvements or additions to documentation question Further information is requested
#548 opened Jun 11, 2024 by EricRLucas
@jonbrenas
6
Pairwise Fst plots - Only plotting one information on each plot enhancement New feature or request question Further information is requested
#542 opened May 24, 2024 by jonbrenas
1
Amend anoph snp_data.py where GQ, AD, MQ are still expected to be alongside GT bug Something isn't working maintenance postponed wontfix This will not be worked on
#525 opened May 16, 2024 by leehart
2
Dash set lower wheel zoom sensitivity enhancement New feature or request
#504 opened Jan 26, 2024 by alimanfoo
Migrate to pydantic validate_call() for public API parameter type validation maintenance
#484 opened Dec 18, 2023 by alimanfoo
Use xarray datasets for more return values maintenance
#472 opened Dec 11, 2023 by alimanfoo
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