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v3.0.0 Alpha 2 release

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@taoliu taoliu released this 07 Dec 16:15
· 622 commits to master since this release
c692b32

The second alpha release contains a newly added a callvar subcommand which can be used to call variants in given peak regions directly from ChIP-seq/ATAC-seq bam files with or without control. It also contains optimization in the MACS3.IO.Parser module to make reading gzipped BED files faster (20% less time).