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Feat/macs3/narrowpeak #645

Merged
merged 39 commits into from
May 16, 2024
Merged

Feat/macs3/narrowpeak #645

merged 39 commits into from
May 16, 2024

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taoliu
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@taoliu taoliu commented May 16, 2024

  1. hmmratac output becomes narrowPeak format. We added a function in BedGraphTrackI so that any peak calls can be refined by given bedGraph file with scores. Now the peak summit from hmmratac is where the highest foldchange score is.
  2. add --cutoff-analysis-max to bdgpeakcall.
  3. some cleanup of the source codes

@taoliu taoliu merged commit 0936aa9 into master May 16, 2024
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2 participants