Feat: Support for Python 3.10 #498

dgalligani · 2022-01-17T10:59:15Z

Hello, I've problems installing MACS using the latest python version, 3.10.1 As I am maintaining a production environment, I cannot downgrade the python version to 3.8 (which is 2 years old)

Please include support for this version :)

Many thanks

taoliu · 2022-01-20T19:53:14Z

Fixed in #497 :)

millerh1 · 2022-02-07T17:53:45Z

Hi @taoliu just wondering if this change might contain a typo... I currently can't install this with pip:

(macs3) millerh1@DESKTOP-D6G0FNB:~/RLPipes$ pip install macs3
Collecting macs3
  Using cached MACS3-3.0.0a6.tar.gz (606 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  ERROR: Command errored out with exit status 1:
   command: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp3r1znaa8
       cwd: /tmp/pip-install-qz0w8gig/macs3_ba72f544defb481db7bade126eac2a2e
  Complete output (1 lines):
  CRITICAL: Python version must >= 3.6!
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/51/59/055d6b44aa28a2d90af59a676b2c55cd0d097424df7979fe721279cd5193/MACS3-3.0.0a6.tar.gz#sha256=03b3df09f1373cb126d491ac08c1735595540e3e705ba0f3ee7c2a6e8c7024b1 (from https://pypi.org/simple/macs3/) (requires-python:>=3.6). Command errored out with exit status 1: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp3r1znaa8 Check the logs for full command output.
  Downloading MACS3-3.0.0a5.tar.gz (588 kB)
     |████████████████████████████████| 588 kB 992 kB/s
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  ERROR: Command errored out with exit status 1:
   command: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp5h_mqwbj
       cwd: /tmp/pip-install-qz0w8gig/macs3_9445a2e7b0464d5e82586f5a93562e2f
  Complete output (1 lines):
  CRITICAL: Python version must >= 3.6!
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/91/ef/6427bc3023f1ecd3ae9e437ec21031d2b4a18518658a411800cfbf919568/MACS3-3.0.0a5.tar.gz#sha256=eb1b8bd16bac94c98ffadbe458c1919c1b0fa69f73ae0f3600716ac835a35012 (from https://pypi.org/simple/macs3/) (requires-python:>=3.6). Command errored out with exit status 1: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp5h_mqwbj Check the logs for full command output.
  Downloading MACS3-3.0.0a4.tar.gz (597 kB)
     |████████████████████████████████| 597 kB 1.8 MB/s
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  ERROR: Command errored out with exit status 1:
   command: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp9bd_6sae
       cwd: /tmp/pip-install-qz0w8gig/macs3_363e44cba46a48fba9d4a6f9a01227ca
  Complete output (1 lines):
  CRITICAL: Python version must >= 3.6!
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/be/30/5e480a0edc04c9a0ed3442323e3c61f6f1e8d6b379d1f578f164243452f5/MACS3-3.0.0a4.tar.gz#sha256=736c47a9c136213741169e3f77899add6181639ec494831afac534f5d02f9e8c (from https://pypi.org/simple/macs3/) (requires-python:>=3.6). Command errored out with exit status 1: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp9bd_6sae Check the logs for full command output.
  Downloading MACS3-3.0.0a3.tar.gz (597 kB)
     |████████████████████████████████| 597 kB 4.3 MB/s
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  ERROR: Command errored out with exit status 1:
   command: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpj398s88z
       cwd: /tmp/pip-install-qz0w8gig/macs3_d0f68ba2bd5b455ea1eb73a95c277a54
  Complete output (1 lines):
  CRITICAL: Python version must >= 3.6!
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/f5/ad/2fd90c46b59c4ae2b5e7a57bd7d4b71e89e661ec7d446b2a969fa7416038/MACS3-3.0.0a3.tar.gz#sha256=f4b6e14113468eb11e4b7b9b28c6e1f6b163662e488bab3d64a7610b5524303f (from https://pypi.org/simple/macs3/) (requires-python:>=3.6). Command errored out with exit status 1: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpj398s88z Check the logs for full command output.
  Downloading MACS3-3.0.0a2.tar.gz (245 kB)
     |████████████████████████████████| 245 kB 7.2 MB/s
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  ERROR: Command errored out with exit status 1:
   command: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpvafc_z6t
       cwd: /tmp/pip-install-qz0w8gig/macs3_a3eb47c9011d412cbb0cae17548a1276
  Complete output (1 lines):
  CRITICAL: Python version must >= 3.6!
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/5f/36/c760516cdd089df00203bc08e44beb2ad47e485fda0b360ee68502ec42f5/MACS3-3.0.0a2.tar.gz#sha256=d0a8bae07f5a5d72d0d60816350d217b9431a80dfcd29d8abc05540b0bdfce34 (from https://pypi.org/simple/macs3/) (requires-python:>=3.6). Command errored out with exit status 1: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpvafc_z6t Check the logs for full command output.
  Downloading MACS3-3.0.0a1.tar.gz (137 kB)
     |████████████████████████████████| 137 kB 8.3 MB/s
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  ERROR: Command errored out with exit status 1:
   command: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp3ep08oao
       cwd: /tmp/pip-install-qz0w8gig/macs3_a553611193a1475d82bac927308666cf
  Complete output (1 lines):
  CRITICAL: Python version must >= 3.6!
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/36/ff/98453c383475cf799d483fbfb27be0a4d979e21999af3985555c49e9a578/MACS3-3.0.0a1.tar.gz#sha256=e05f981231d8c83b2a98fac9fd3875cb25eb137acb08d5e90b5b8516a57ddc03 (from https://pypi.org/simple/macs3/) (requires-python:>=3.6). Command errored out with exit status 1: /home/millerh1/miniconda3/envs/macs3/bin/python /home/millerh1/miniconda3/envs/macs3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp3ep08oao Check the logs for full command output.
ERROR: Could not find a version that satisfies the requirement macs3 (from versions: 3.0.0a1, 3.0.0a2, 3.0.0a3, 3.0.0a4, 3.0.0a5, 3.0.0a6)
ERROR: No matching distribution found for macs3

taoliu · 2022-02-08T15:19:16Z

@millerh1 I will upload a new release this week with the mentioned patch #497 The change hasn't been included in the current 3.0.0a6 on PyPI.

millerh1 · 2022-02-08T16:12:36Z

My bad! I was just experiencing the original 3.10 issue... Thank you :)

dgalligani · 2022-02-09T08:37:24Z

Oh, many thanks! 🙂

…

________________________________ From: Tao Liu (τν) ***@***.***> Sent: 20 January 2022 20:53 To: macs3-project/MACS ***@***.***> Cc: David Galligani ***@***.***>; Author ***@***.***> Subject: Re: [macs3-project/MACS] Feat: Support for Python 3.10 (Issue #498) Fixed in #497<#497> :) — Reply to this email directly, view it on GitHub<#498 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ASRAZEK36CEVCG3KY6YPGA3UXBR3JANCNFSM5MEL3HMQ>. Triage notifications on the go with GitHub Mobile for iOS<https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android<https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. You are receiving this because you authored the thread.Message ID: ***@***.***>

taoliu · 2022-02-18T18:11:35Z

Fixed in the release v3.0.0a7 https://github.com/macs3-project/MACS/releases/tag/v3.0.0a7

dgalligani added the Feature Request label Jan 17, 2022

millerh1 mentioned this issue Feb 7, 2022

Error building test_data Bishop-Laboratory/RLPipes#81

Closed

taoliu closed this as completed Feb 18, 2022

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Feat: Support for Python 3.10 #498

Feat: Support for Python 3.10 #498

dgalligani commented Jan 17, 2022

taoliu commented Jan 20, 2022

millerh1 commented Feb 7, 2022

taoliu commented Feb 8, 2022

millerh1 commented Feb 8, 2022

dgalligani commented Feb 9, 2022 via email

taoliu commented Feb 18, 2022

Feat: Support for Python 3.10 #498

Feat: Support for Python 3.10 #498

Comments

dgalligani commented Jan 17, 2022

taoliu commented Jan 20, 2022

millerh1 commented Feb 7, 2022

taoliu commented Feb 8, 2022

millerh1 commented Feb 8, 2022

dgalligani commented Feb 9, 2022 via email

taoliu commented Feb 18, 2022