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@ltnetcase ltnetcase released this 23 Oct 03:29
· 16 commits to master since this release
1.2.0
3434265

BedAnno 1.20 Release Note

Compare with 1.15 updates

Features updated

  1. IO::Uncompress::Gunzip add option MultiStream => 1 to fit the need of version update of this package
  2. Variant position and ref alt standardization method update to have the ablity to not to give rep format variant with left aligned, and this is used when querying public databases.

Issue Fixed

  1. Change to give ext format pHGVS instead of fs format for stop-loss function variants.
  2. Change to give 'stop-retained' function instead of 'no-change' to variants located at stop-codon region with neither AA change nor stop-codon effect change， and give the format like p.(*123=) pHGVS.
  3. Fix issue when transcript-refgenome differences on the edge of exon where variants located at, give the most accurate prediction of functions.
  4. Fix issue of gHGVS format string gives left aligned variant format problem.
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