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lskatz committed May 20, 2024
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Expand Up @@ -138,3 +138,35 @@ @article{ondov2016mash
year={2016},
publisher={Springer}
}

@article{nasko2018refseq,
title={RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification},
author={Nasko, Daniel J and Koren, Sergey and Phillippy, Adam M and Treangen, Todd J},
journal={Genome biology},
volume={19},
pages={1--10},
year={2018},
publisher={Springer}
}

@article{o2016reference,
title={Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation},
author={O'Leary, Nuala A and Wright, Mathew W and Brister, J Rodney and Ciufo, Stacy and Haddad, Diana and McVeigh, Rich and Rajput, Bhanu and Robbertse, Barbara and Smith-White, Brian and Ako-Adjei, Danso and others},
journal={Nucleic acids research},
volume={44},
number={D1},
pages={D733--D745},
year={2016},
publisher={Oxford University Press}
}

@article{parks2022gtdb,
title={GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy},
author={Parks, Donovan H and Chuvochina, Maria and Rinke, Christian and Mussig, Aaron J and Chaumeil, Pierre-Alain and Hugenholtz, Philip},
journal={Nucleic acids research},
volume={50},
number={D1},
pages={D785--D794},
year={2022},
publisher={Oxford University Press}
}

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