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another paper revision
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lskatz committed Sep 10, 2024
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scientificName nuccoreAcc taxid parent
Acholeplasma laidlawii CP000896 2148 2147
Acinetobacter baumannii CU468230 509170 470
Acinetobacter pittii NC_016603 48296 909768
Aeromonas hydrophila NC_008570 644 642
Agrobacterium fabrum NC_003062 1176649 1183400
Agrobacterium fabrum NC_003063 1176649 1183400
Alkaliphilus transvaalensis CP000724 208226 114627
Aliivibrio fischeri NC_006841 668 511678
Aliivibrio fischeri NC_006840 668 511678
Amycolatopsis mediterranei NC_014318 33910 1813
Aquifex aeolicus NC_000918 63363 2713
Architeuthis dux NC_011581 256136 34555
Arcobacter bivalviorum CP031217 663364 2321115
Arcobacter cibarius CP043857 255507 28196
Arcobacter ellisii CP032097 913109 28196
Arcobacter halophilus CP031218 197482 28196
Arcobacter molluscorum CP032098 1032072 28196
Arcobacter mytili CP031219 603050 28196
Arcobacter skirrowii CP032099 28200 28196
Arcobacter suis CP032100 1278212 28196
Arcobacter thereius CP035926 544718 28196
Arcobacter trophiarum CP031367 708186 28196
Arripis trutta AP006810 270544 163128
Atlantibacter hermannii CP042941 565 1903434
Bacillus cereus AP007209 1396 86661
Bacillus subtilis NC_000964 1423 653685
Bacillus thuringiensis NC_005957 1428 86661
Bacteroides fragilis NC_006347 817 816
Bacteroides thetaiotaomicron NC_004663 818 816
Bartonella bacilliformis CP000524 774 773
Betacoronavirus coronavirus MT233526 2697049 694009
Bifidobacterium adolenscentis CP028341 1680 1678
Bifidobacterium bifidum NC_014638 1681 1678
Bifidobacterium longum NC_004307 216816 1678
Bordetella bronchiseptica NC_019382 518 517
Borreliella burgdorferi NC_001318 139 64895
Bos taurus KC153975 9913 9903
Brachybacterium faecium CP001643 43669 43668
Bradyrhizobium diazoefficiens NC_004463 1355477 374
Brassica oleracea NC_016118 3712 3705
Buchnera aphidicola NC_002528 9 32199
Burkholderia pseudomallei NC_006350 28450 111527
Burkholderia pseudomallei NC_006351 28450 111527
Campylobacter avium CP022347 522484 522485
Campylobacter coli CP028187 195 194
Campylobacter concisus CP012541 199 194
Campylobacter cuniculorum CP020867 374106 194
Campylobacter fetus CP006833 196 194
Campylobacter gracilis CP012196 824 194
Campylobacter helveticus NZ_CP020478 28898 194
Campylobacter hyointestinalis hyointestinalis CP015575 91352 198
Campylobacter hyointestinalis lawsonii CP015575 91353 198
Campylobacter insulaenigrae CP007770 260714 194
Campylobacter jejuni jejuni NC_002163 32022 197
Campylobacter lanienae CP015578 75658 194
Campylobacter lari CP000932 201 194
Campylobacter peloridis CP007766 488546 194
Campylobacter sputorum CP019683 202 194
Campylobacter subantarcticus CP007772 497724 194
Campylobacter ureolyticus CP012195 827 194
Campylobacter volucris CP007774 1031542 194
Candidatus Desulforudis audaxviator CP000860 471827 471826
Candidatus Korarchaeum cryptofilum CP000968 374847 498846
Caulobacter vibrioides NC_011916 155892 75
Chlamydia pneumoniae NC_000922 83558 810
Chlamydia trachomatis NC_000117 813 810
Chlamydomonas reinhardtii AF008237 3055 3052
Chlorobaculum tepidum NC_002932 1097 256319
Chloroflexus aurantiacus NC_010175 1108 1107
Citrobacter freundii CP007557 546 544
Citrobacter amalonaticus CP014070 35703 544
Clavibacter michiganensis_sepedonicus AM849034 31964 28447
Clostridioides difficile NC_009089 1496 1870884
Clostridium acetobutylicum NC_003030 1488 1485
Clostridium argentinense CP014176 29341 1485
Clostridium baratii CP014204 1561 1485
Clostridium botulinum groupI NC_010723 9000005 1491
Clostridium botulinum groupII NC_010516 9000004 1491
Clostridium butyricum CP013239 1492 1485
Clostridium perfringens NC_008262 1502 1485
Corynebacterium diphtheriae CP091095 1717 1716
Corynebacterium glutamicum NC_003450 1718 1716
Corynebacterium urealyticum AM942444 43771 1716
Coxiella burnetii NC_002971 777 776
Cronobacter condimenti CP012264 1163710 413496
Cronobacter dublinensis dublinensis CP012266 413498 413497
Cronobacter malonaticus CP006731 413503 413496
Cronobacter muytjensii CP012268 413501 413496
Cronobacter sakazakii CP011047 28141 413496
Cronobacter turicensis FN543093 413502 413496
Cronobacter universalis CP012257 535744 413496
Cryptosporidium parvum CM000429 353152 5806
Cryptosporidium parvum CM000430 353152 5806
Cryptosporidium parvum CM000431 353152 5806
Cryptosporidium parvum CM000432 353152 5806
Cryptosporidium parvum CM000433 353152 5806
Cryptosporidium parvum CM000434 353152 5806
Cryptosporidium parvum CM000435 353152 5806
Cryptosporidium parvum CM000436 353152 5806
Cryptosporidium hominis LN877947 237895 5806
Cryptosporidium hominis LN877948 237895 5806
Cryptosporidium hominis LN877949 237895 5806
Cryptosporidium hominis LN877950 237895 5806
Cryptosporidium hominis LN877951 237895 5806
Cryptosporidium hominis LN877952 237895 5806
Cryptosporidium hominis LN877953 237895 5806
Cryptosporidium hominis LN877954 237895 5806
Cupriavidus taiwanensis CU633750 164546 106589
Cupriavidus taiwanensis CU633749 164546 106589
Cyanothece CP000806 43989 2546360
Cyanothece CP000807 43989 2546360
Deinococcus radiodurans NC_001263 1299 1298
Deinococcus radiodurans NC_001264 1299 1298
Delftia acidovorans CP000884 80866 80865
Desulfovibrio vulgaris NC_002937 881 872
Dictyoglomus turgidum NC_011661 513050 13
Enterobacter cloacae NC_014121 550 354276
Enterococcus faecalis NC_004668 1351 1350
Enterococcus faecium NC_017960 1352 1350
Escherichia albertii CP024282 208962 561
Escherichia coli CP027582 562 561
Escherichia fergusonii CP042945 564 561
Exiguobacterium antarcticum CP003063 132920 33986
Finegoldia magna AP008971 1260 150022
Flavobacterium psychrophilum NC_009613 96345 237
Francisella philomiragia CP063138 28110 262
Francisella tularensis NC_006570 263 262
Fusobacterium nucleatum CP028101 851 848
Gallus gallus HQ857211 9031 9030
Gardnerella vaginalis NC_014644 2702 2701
Geobacter sulfurreducens NC_002939 35554 28231
Gloeobacter violaceus NC_005125 33072 33071
Grimontia hollisae CP035690 673 246861
Grimontia hollisae CP035691 673 246861
Haemophilus influenzae L42023 727 724
Haemophilus somnus CP000947 228400 731
Halobacterium salinarum AM774415 478009 2242
Helianthus annuus MG770607 4232 4231
Helicobacter pylori AE000511 210 209
Heliobacterium modesticaldum CP000930 35701 2697
Homo sapiens NC_012920 9606 9605
Humulus lupulus NC_086845 3486 3484
Ketogulonicigenium vulgare NC_017384 92945 92944
Klebsiella aerogenes NC_015663 548 570
Klebsiella pneumoniae NC_016845 573 570
Lactobacillus acidophilus NC_006814 1579 1578
Lactobacillus paracasei NC_008526 1597 655183
Lactobacillus plantarum NC_004567 1590 1578
Lactobacillus salivarius NC_007929 1624 1578
Lactococcus lactis NC_002662 1358 1357
Lactuca sativa MK820672 75943 4235
Legionella pneumophila NC_002942 446 445
Leptospira biflexa CP000777 355278 145259
Leptospira interrogans NC_004342 173 171
Leptothrix cholodnii CP001013 34029 88
Leuconostoc citreum DQ489736 349519 33964
Listeria grayi LR134483 1641 1637
Listeria innocua CP045743 1642 1637
Listeria ivanovii FR687253 1638 1637
Listeria marthii CM001047 529731 1637
Listeria monocytogenes I CP054040 9000000 1639
Listeria monocytogenes II CP054042 9000001 1639
Listeria monocytogenes III CP054039 9000002 1639
Listeria monocytogenes IV CP054041 9000003 1639
Listeria seeligeri FN557490 1640 1637
Listeria welshimeri LT906444 1643 1637
Lysinibacillus sphaericus CP000817 444177 1421
Mesoplasma florum NC_006055 2151 46239
Mesorhizobium ciceri NC_014923 39645 68287
Methylobacterium CP000943 426117 2615210
Methylobacterium radiotolerans CP001001 31998 407
Micrococcus luteus CP001628 1270 1269
Moorella thermoacetica CP012370 1525 44260
Morganella morganii morganii CP004345 180434 582
Mycobacterium abscessus NC_010397 36809 670516
Mycobacterium leprae NC_002677 1769 1763
Mycobacterium smegmatis NC_008596 1772 1866885
Mycobacterium tuberculosis NC_000962 1773 77643
Mycoplasma mycoides NC_005364 2102 656088
Mycoplasma pneumoniae NC_000912 2104 2093
Neisseria gonorrhoeae NC_002946 485 482
Neisseria meningitidis NC_003112 487 482
Neomysis japonica KR006340 1676841 223649
Ochrobactrum anthropi CP000758 529 528
Ochrobactrum anthropi CP000759 529 528
Pantoea ananatis CP001875 553 53335
Parabacteroides distasonis CP000140 823 375288
Photobacterium damselae CP046752 38293 657
Photobacterium damselae CP046751 38293 657
Pollachius virens FR751399 8060 8059
Polynucleobacter necessarius LT615228 576610 44013
Prochlorococcus marinus NC_005042 1219 1218
Proteus mirabilis NC_022000 584 583
Pseudomonas aeruginosa NC_002516 287 136841
Pseudomonas putida AP013070 390235 303
Pseudomonas syringae group genomosp. 3 NC_004578 251701 136849
Pyrobaculum neutrophilum CP001014 70771 2276
Rhodobacter sphaeroides NC_007494 1063 1060
Rhodobacter sphaeroides NC_007493 1063 1060
Rhodopirellula baltica NC_005027 265606 265488
Rhodospirillum rubrum NC_007643 1085 1081
Ruminococcus sp. CP039381 1263 541000
Rickettsia prowazekii NC_000963 782 114292
Salinibacter ruber NC_007677 146919 146918
Salmonella bongori FR877557 54736 590
Salmonella enterica IIa CP053411 9000010 28901
Salmonella enterica IIb LR134141 9000011 28901
Salmonella enterica IIIa CP000880 9000014 28901
Salmonella enterica IIIb CP053583 9000015 28901
Salmonella enterica I AE006468 59201 28901
Salmonella enterica IV CP053579 59205 28901
Salmonella enterica IX CP054715 9000016 28901
Salmonella enterica VII CP053582 59208 28901
Salmonella enterica VIII CP053318 9000009 28901
Salmonella enterica VI CP053406 59207 28901
Salmonella enterica X CP053581 9000017 28901
Serratia liquefaciens CP006252 614 613
Shewanella halifaxensis CP000931 271098 22
Shewanella oneidensis NC_004347 70863 22
Shewanella woodyi CP000961 60961 22
Shimwellia blattae CP001560 563 1335483
Sinorhizobium fredii NC_012587 380 663276
Sinorhizobium medicae NC_009636 110321 28105
Sinorhizobium meliloti NC_003047 382 28105
Solanum lycopersicum NC_035963 4081 49274
Staphylococcus aureus NZ_CP009554 46170 1280
Staphylococcus epidermidis NC_004461 1282 1279
Streptococcus agalactiae NC_004116 1311 1301
Streptococcus mitis NC_013853 28037 1301
Streptococcus mutans NC_004350 1309 1301
Streptococcus pneumoniae CP000936 487214 1313
Streptococcus pyogenes NC_002737 1314 1301
Streptococcus sanguinis NC_009009 1305 1301
Streptococcus suis NC_012926 1307 1301
Sus scrofa FJ236999 9823 9822
Synechococcus CP000951 32049 2626047
Thermanaerovibrio acidaminovorans NC_013522 81462 81461
Thermoanaerobacter pseudethanolicus CP000924 496866 1754
Thermodesulfovibrio yellowstonii NC_011296 28262 28261
Thermosynechococcus elongatus NC_004113 146786 146785
Thermotoga maritima NC_000853 2336 2335
Thermus thermophilus NC_006461 274 270
Thunnus alalunga AB101291 8235 8234
Treponema denticola NC_002967 158 157
Ureaplasma parvum CP000942 134821 2129
Vibrio alginolyticus CP035699 663 717610
Vibrio alginolyticus CP035700 663 717610
Vibrio cholerae_O1 CP038178 127906 666
Vibrio cholerae_O1 CP038179 127906 666
Vibrio cidicii CP046804 1763883 662
Vibrio cidicii CP046803 1763883 662
Vibrio cincinnatiensis CP035697 675 662
Vibrio cincinnatiensis CP035698 675 662
Vibrio fluvialis CP051126 676 662
Vibrio fluvialis CP051127 676 662
Vibrio furnissii CP046797 29494 662
Vibrio furnissii CP046798 29494 662
Vibrio harveyi CP035692 669 717610
Vibrio harveyi CP035693 669 717610
Vibrio metoecus CP046817 1481663 662
Vibrio metoecus CP046818 1481663 662
Vibrio metschnikovii CP035684 28172 662
Vibrio metschnikovii CP035685 28172 662
Vibrio mimicus CP035682 674 662
Vibrio mimicus CP035683 674 662
Vibrio navarrensis CP046791 29495 662
Vibrio navarrensis CP046792 29495 662
Vibrio parahaemolyticus CP046828 670 717610
Vibrio parahaemolyticus CP046827 670 717610
Vibrio vulnificus CP046832 672 662
Vibrio vulnificus CP046833 672 662
Vicia faba KC189947 3906 3904
Xanthomonas campestris NC_003902 339 338
Xylella fastidiosa CP000941 405440 2371
Yersinia aldovae CP009781 29483 629
Yersinia bercovieri CP054044 634 629
Yersinia canariae NZ_CP043727 2607663 629
Yersinia enterocolitica NC_015224 630 629
Yersinia enterocolitica NC_008800 630 629
Yersinia frederiksenii CP023962 29484 629
Yersinia hibernica NZ_CP032487 2339259 629
Yersinia intermedia CP009801 631 629
Yersinia kristensenii CP054049 631 629
Yersinia massiliensis CP054048 33060 629
Yersinia mollaretii CP054043 33060 629
Yersinia pseudotuberculosis CP009712 502800 633
Yersinia rochesterensis CP032482 1604335 629
Yersinia rohdei CP009787 29485 629
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