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feat(ena-deposition): Add metadata revision option #3180

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@anna-parker anna-parker commented Nov 5, 2024

resolves #3177

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PR Checklist

  • All necessary documentation has been adapted.
  • The implemented feature is covered by an appropriate test.

@anna-parker anna-parker added the preview Triggers a deployment to argocd label Nov 5, 2024
@@ -50,7 +50,7 @@ def secure_ena_connection(config: Config):
config.test = True
logging.info("Submitting to ENA dev environment")
config.ena_submission_url = "https://wwwdev.ebi.ac.uk/ena/submit/drop-box/submit"
config.github_url = "https://raw.githubusercontent.com/pathoplexus/ena-submission/main/test/approved_ena_submission_list.json"
config.github_url = "https://raw.githubusercontent.com/pathoplexus/ena-submission/loculus_test/test/approved_ena_submission_list.json"
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Revert before merge

Suggested change
config.github_url = "https://raw.githubusercontent.com/pathoplexus/ena-submission/loculus_test/test/approved_ena_submission_list.json"
config.github_url = "https://raw.githubusercontent.com/pathoplexus/ena-submission/main/test/approved_ena_submission_list.json"

@anna-parker anna-parker changed the title Add_revision_for_ena feat(ena-deposition): Add metadata revision option Nov 6, 2024
@corneliusroemer corneliusroemer removed the preview Triggers a deployment to argocd label Nov 23, 2024
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Automate revising sequence metadata in samples submitted to ENA
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