update test

lmdu · Mar 19, 2024 · 8544133 · 8544133
1 parent 3cf99f5
commit 8544133
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Showing 2 changed files with 7 additions and 7 deletions.
diff --git a/src/str.c b/src/str.c
@@ -158,7 +158,7 @@ static PyObject* pytrf_strfinder_as_list(pytrf_STRFinder *self) {
 			b = self->boundary[j];
 
 			while ((i < b) && (self->seq[i] == self->seq[i+j])) {
-				++i;
+				++i; 
 			}
 
 			rl = i + j - cs;

diff --git a/test.py b/test.py
@@ -1,14 +1,14 @@
+import time
 import pytrf
 import pyfastx
 
-fa = pyfastx.Fasta('../krait2/data/chr2.fa.gz', uppercase=True)
+fa = pyfastx.Fasta('../data/chr2.fa.gz', uppercase=True)
 
 for s in fa:
 	pass
 
-atrs = pytrf.GTRFinder(s.name, s.seq, min_motif=10, max_motif=100)
+ssrs = pytrf.STRFinder(s.name, s.seq)
+for ssr in ssrs:
+	print(ssr.as_list())
+	break
 
-for atr in atrs:
-	print(atr.as_string())
-
-#print(len(atrs.as_list()))