NOAA - Ocean Acidification Program

Tools for manipulating and plotting pH glider data.

Author: Lori Garzio ([email protected])

Installation Instructions

Add the channel conda-forge to your .condarc. You can find out more about conda-forge from their website: https://conda-forge.org/

conda config --add channels conda-forge

Clone the noaa-oap repository.

git clone https://github.com/lgarzio/noaa-oap.git

Change your current working directory to the location that you downloaded noaa-oap.

cd /Users/lgarzio/Documents/repo/noaa-oap/

Create conda environment from the included environment.yml file:

conda env create -f environment.yml

Once the environment is done building, activate the environment:

conda activate noaa-oap

Install the toolbox to the conda environment from the root directory of the noaa-oap toolbox:

pip install .

The toolbox should now be installed to your conda environment.

Glider Data

Full-resolution delayed-mode glider datasets containing raw pH voltages can be found on RUCOOL's Glider ERDDAP Server.

Full-resolution quality-controlled delayed-mode glider datasets containing calculated pH and other variables can be found on the Glider DAC's ERDDAP Server.

Citations

CODAP-NA: Jiang, L.-Q., Feely, R. A., Wanninkhof, R., Greeley, D., Barbero, L., Alin, S., Carter, B. R., Pierrot, D., Featherstone, C., Hooper, J., Melrose, C., Monacci, N., Sharp, J. D., Shellito, S., Xu, Y.-Y., Kozyr, A., Byrne, R. H., Cai, W.-J., Cross, J., Johnson, G. C., Hales, B., Langdon, C., Mathis, J., Salisbury, J., and Townsend, D. W.: Coastal Ocean Data Analysis Product in North America (CODAP-NA) – an internally consistent data product for discrete inorganic carbon, oxygen, and nutrients on the North American ocean margins, Earth Syst. Sci. Data, 13, 2777–2799, https://doi.org/10.5194/essd-13-2777-2021, 2021.

Humphreys, M. P., Gregor, L., Pierrot, D., van Heuven, S. M. A. C., Lewis, E. R., and Wallace, D. W. R. (2020). PyCO2SYS: marine carbonate system calculations in Python. Zenodo. doi:10.5281/zenodo.3744275.

Lewis, E. and Wallace, D. W. R. (1998) Program Developed for CO2 System Calculations, ORNL/CDIAC-105, Carbon Dioxide Inf. Anal. Cent., Oak Ridge Natl. Lab., Oak Ridge, Tenn., 38 pp., https://salish-sea.pnnl.gov/media/ORNL-CDIAC-105.pdf