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Update README.md
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andrefaure authored Aug 14, 2024
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Expand Up @@ -40,7 +40,7 @@ MoCHI requires a plain text model design file containing a table describing the
- `trait`: One or more additive trait names
- `transformation`: The shape of the global epistatic trend (Linear/ReLU/SiLU/Sigmoid/SumOfSigmoids/TwoStateFractionFolded/ThreeStateFractionBound)
- `phenotype`: A unique phenotype name e.g. Abundance, Binding or Kinase Activity
- `file`: Path to DiMSum output (.RData) or plain text file with variant fitness and error estimates for the corresponding phenotype
- `file`: Path to DiMSum output (.RData) or plain text file with variant fitness and error estimates for the corresponding phenotype(s) (nucleotide sequence example [here](https://github.com/lehner-lab/MoCHI/blob/master/pymochi/data/fitness_example_nt.txt), amino acid sequence example [here](https://github.com/lehner-lab/MoCHI/blob/master/pymochi/data/fitness_example_aa.txt))

## Option A: MoCHI command line tool

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