Merge branch 'master' of https://github.com/lehner-lab/DiMSum

lehner-lab · Nov 20, 2024 · a33141d · a33141d
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 ## ALIGN Arguments
 
 * **_--vsearchMinQual_** Minimum Phred base quality score required to retain read or read pair (default:30)
+* **_--vsearchMaxQual_** Maximum Phred base quality score accepted when reading (and used when writing) FASTQ files; cannot be greater than 93 (default:41)
 * **_--vsearchMaxee_** Maximum number of expected errors tolerated to retain read or read pair (default:0.5)
 * **_--vsearchMinovlen_** Discard read pair if the alignment length is shorter than this (default:10)