genesis v0.32.0

Notable Changes

• population
  • Add per-sample mask tags and functions
  • Add mask for provided loci to window averaging function
  • Add Genome Locus Set invert function
  • Add Genome Window View chromosome lengths
  • Exclude missing data from available loci window avg function
• tree
  • Add tree drawing wrapper functions with node and edge shapes
  • Refine tree postorder iterator for speed
• sequence
  • Refactor and rename Fasta and Fastq Iterators to Streams
  • Speed up Fasta and Fastq reading and offer string view reading
• utils
  • Speed up Thread Pool by using Concurrent Queue
  • Add several convenience functions to Thread Pool and threading
  • Add hardware feature detection and current resource usage functions
  • Add Sequential Output Buffer class
  • Add stdin input source and stdout stderr output targets
  • Refactor Input Stream get line functions to use AVX2
  • Outsource int parsing from input stream
• bugfixes
  • Fix reference base lower case comparison issue in population
  • Fix VCF with non-SNP AD field entries and deletions